View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21539_low_3 (Length: 580)
Name: NF21539_low_3
Description: NF21539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21539_low_3 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 6e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 62 - 206
Target Start/End: Complemental strand, 21263343 - 21263201
Alignment:
| Q |
62 |
tattaataatgaattttggtgcatattgttttttgattgccgaccaatattgagaaaatttgttttcaattaatttttcgaatgttggatgcaatcaaat |
161 |
Q |
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| T |
21263343 |
tattaataatgaattttggtgcat--tgttttttgattgcagaccaatattcagaaaatttcttttcaattaatttttcgaatgttggatgcaatcgaat |
21263246 |
T |
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| Q |
162 |
atcaatatattcaatattgagtccctaaatattttatgcggttat |
206 |
Q |
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| T |
21263245 |
atcaatatattcaatattgagtccctaaatattttatgcggttat |
21263201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 21263118 - 21263009
Alignment:
| Q |
261 |
aattggattacacttgtcttacccaatacttattatcaacaatagctaatatctggaagcctaaaatggattggattttaatacaaaagtagaatacatg |
360 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21263118 |
aattggatcacacttgttttacccaatacttattatcaacaatagctaatatctggaagcctaaaatggattggatttcaatacaaaagtagaatacatg |
21263019 |
T |
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| Q |
361 |
tgatatgtgc |
370 |
Q |
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|||||||||| |
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| T |
21263018 |
tgatatgtgc |
21263009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 21263434 - 21263374
Alignment:
| Q |
1 |
tttacctataaaagatccttcatacacgagacaaagtatctctttccggatcaagtaattc |
61 |
Q |
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| T |
21263434 |
tttacatataaaagatccttcatacacgagacaaagtatctctttccggatcaagtaattc |
21263374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 550
Target Start/End: Complemental strand, 33700643 - 33700568
Alignment:
| Q |
475 |
ctagtttccaccaaaaatctatgctatcacctaaaatattaatatagtttgaaaaagacctgaccataaaatttag |
550 |
Q |
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| T |
33700643 |
ctagttttaacctaaaatctctgctatcacataaggtagtaatataatttgcaaaagacctgaccgtaaaatttag |
33700568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 40274 - 40335
Alignment:
| Q |
1 |
tttacctataaaagatccttcatacacg-agacaaagtatctctttccggatcaagtaattc |
61 |
Q |
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|||| |||||||||||| |||||||||| |||||||||| ||||||||||| |||||||||| |
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| T |
40274 |
tttatctataaaagatcattcatacacggagacaaagtaactctttccggaccaagtaattc |
40335 |
T |
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