View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21539_low_4 (Length: 556)

Name: NF21539_low_4
Description: NF21539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21539_low_4
NF21539_low_4
[»] chr3 (16 HSPs)
chr3 (160-483)||(23476897-23477211)
chr3 (251-495)||(23433801-23434045)
chr3 (246-369)||(23445731-23445854)
chr3 (279-487)||(23497438-23497646)
chr3 (305-487)||(23461755-23461937)
chr3 (316-487)||(23452658-23452832)
chr3 (160-248)||(23497346-23497434)
chr3 (324-487)||(23403170-23403333)
chr3 (311-540)||(23350436-23350668)
chr3 (323-496)||(23470883-23471059)
chr3 (323-487)||(23438383-23438550)
chr3 (1-67)||(23433680-23433749)
chr3 (333-487)||(23382020-23382174)
chr3 (311-367)||(23400700-23400756)
chr3 (1-67)||(23476792-23476861)
chr3 (314-356)||(36000939-36000981)
[»] scaffold0201 (1 HSPs)
scaffold0201 (305-487)||(9927-10109)
[»] chr8 (1 HSPs)
chr8 (391-470)||(15043187-15043266)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 160 - 483
Target Start/End: Original strand, 23476897 - 23477211
Alignment:
Q  160 atgacttcgcctccaattgatgtaggctgtaactcatcattataactttcctggccatcttcactttcattgttagaccaatcagacccaccagaatatt 259  Q
    |||||||| |||||||||| || |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||   |||||||||    
T  23476897 atgacttcacctccaattgctgaaggctgtaactcatcattataattttcctggccatcttcaatttcattgttagaccaataagacctgtcagaatatt 23476996  T
Q  260 gagcactgaattttaatttaccaatttcgctaccatccagatccgactcatgttctaagtcatatacaggtaagaccccacacccctttatcccctctgt 359  Q
    ||  |||||||||||||||||||||||| |||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||| || |||||||| ||    
T  23476997 gattactgaattttaatttaccaatttccctaccagccagatccgacttatgttctaagttatatacaggtaagatcccacaccctttgatcccctccgt 23477096  T
Q  360 tgaccaccacgattggtccttgtagccttcatgtatgaaatgaaatgataggttgcaatcaaaacttccaatgttttttctgttgtaacgatgccaacgt 459  Q
    |||||||| | |||   | ||         ||||||||| ||||||||||| || ||||||  ||||||||  |||| ||| ||||||| || ||||| |    
T  23477097 tgaccaccccaattctacgtt---------atgtatgaattgaaatgatagtttacaatcattacttccaaatttttctcttttgtaacaataccaacat 23477187  T
Q  460 atcaatacatgatctgaagttaat 483  Q
    | |||||||||||||||| |||||    
T  23477188 aacaatacatgatctgaaattaat 23477211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 251 - 495
Target Start/End: Original strand, 23433801 - 23434045
Alignment:
Q  251 cagaatattgagcactgaattttaatttaccaatttcgctaccatccagatccgactcatgttctaagtcatatacaggtaagaccccacacccctttat 350  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| |||||||||| |||||||||||| ||    
T  23433801 cagaatattgagcactgaattttaatttaccaatttccctaccatccagatccgacttatgttctaagttatacacaggtaagatcccacaccccttgat 23433900  T
Q  351 cccctctgttgaccaccacgattggtccttgtagccttcatgtatgaaatgaaatgataggttgcaatcaaaacttccaatgttttttctgttgtaacga 450  Q
    ||||||||||||||||||| |||  || |||    ||| ||| ||||| |||||||||||||||||||||  ||||||||  |||| |||||||||| ||    
T  23433901 cccctctgttgaccaccacaattcttcattgagatcttgatgcatgaattgaaatgataggttgcaatcattacttccaagtttttgtctgttgtaagga 23434000  T
Q  451 tgccaacgtatcaatacatgatctgaagttaatgtccgaatataa 495  Q
    ||||||| |||||| || ||||||||| |||||| || |||||||    
T  23434001 tgccaacatatcaaaacgtgatctgaaattaatgccccaatataa 23434045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 246 - 369
Target Start/End: Original strand, 23445731 - 23445854
Alignment:
Q  246 cccaccagaatattgagcactgaattttaatttaccaatttcgctaccatccagatccgactcatgttctaagtcatatacaggtaagaccccacacccc 345  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  23445731 cccaccagaatattgagcactgaattttaatttaccaatttccctaccatccagatctgacttatgttctaagttatatacaggtaagaccccacacccc 23445830  T
Q  346 tttatcccctctgttgaccaccac 369  Q
    ||||||||||| ||||||||||||    
T  23445831 tttatcccctccgttgaccaccac 23445854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 279 - 487
Target Start/End: Original strand, 23497438 - 23497646
Alignment:
Q  279 accaatttcgctaccatccagatccgactcatgttctaagtcatatacaggtaagaccccacacccctttatcccctctgttgaccaccacgattggtcc 378  Q
    ||||||||| | ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||     
T  23497438 accaatttcccaaccatccagattcgacttatgttctaagttatatacaggtaagaccccacacccctttatcccctctgttgaccaccacaattcttca 23497537  T
Q  379 ttgtagccttcatgtatgaaatgaaatgataggttgcaatcaaaacttccaatgttt-tttctgttgtaacgatgccaacgtatcaatacatgatctgaa 477  Q
    ||| |  ||| ||| ||||| |||||||||||||||||||||  |||||| ||||||   |||||||||| ||||||||| ||||||||| |||||||||    
T  23497538 ttgaaatcttgatgcatgaattgaaatgataggttgcaatcattacttcc-atgtttccgtctgttgtaaggatgccaacatatcaatacgtgatctgaa 23497636  T
Q  478 gttaatgtcc 487  Q
     |||||||||    
T  23497637 attaatgtcc 23497646  T

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Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 305 - 487
Target Start/End: Original strand, 23461755 - 23461937
Alignment:
Q  305 actcatgttctaagtcatatacaggtaagaccccacacccctttatcccctctgttgaccaccacgattggtccttgtagccttcatgtatgaaatgaaa 404  Q
    ||||| |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| |||  || |||   |||| | ||||||| | |||    
T  23461755 actcacgttctaaggcatatacaggtatgaccccacacccttttatcccctctgttgaccaccacaattcttcattgggaccttgaagtatgaatttaaa 23461854  T
Q  405 tgataggttgcaatcaaaacttccaatgttttttctgttgtaacgatgccaacgtatcaatacatgatctgaagttaatgtcc 487  Q
    ||||| ||| |||||| |||||||| | | || | ||||||||| ||||||||| |||||||||||||||||| |||||||||    
T  23461855 tgataagttacaatcataacttccactttcttgtatgttgtaaccatgccaacgcatcaatacatgatctgaaattaatgtcc 23461937  T

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Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 316 - 487
Target Start/End: Original strand, 23452658 - 23452832
Alignment:
Q  316 aagtcatatacaggtaagaccccacacccctttatcccctctgttgaccaccacgattggtccttgtagccttcatgtatgaaatgaaatgataggttgc 415  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |  |||| | ||| ||| ||||||||||||||||    
T  23452658 aagtcatatacaggtaagactccacacccctttatcccctctgttgaccaccacaattgttccttttgaccttgaagtaggaactgaaatgataggttgc 23452757  T
Q  416 aa---tcaaaacttccaatgttttttctgttgtaacgatgccaacgtatcaatacatgatctgaagttaatgtcc 487  Q
    ||   |||  ||||||| | | || | ||||||||| || ||| | ||||||||||||||||||| |||||||||    
T  23452758 aaaagtcatgacttccagtttcttgtttgttgtaaccattccagcatatcaatacatgatctgaaattaatgtcc 23452832  T

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Target: chr3; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 23497346 - 23497434
Alignment:
Q  160 atgacttcgcctccaattgatgtaggctgtaactcatcattataactttcctggccatcttcactttcattgttagaccaatcagaccc 248  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  23497346 atgacttcacctccaattgatgtaggttgtaactcatcattataatttccctggccatcttcactttcattgttagaccaatcagaccc 23497434  T

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Target: chr3; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 324 - 487
Target Start/End: Original strand, 23403170 - 23403333
Alignment:
Q  324 tacaggtaagaccccacacccctttatcccctctgttgaccaccacgattggtccttgtagccttcatgtatgaaatgaaatgataggttgcaatcaaaa 423  Q
    |||||| |||||||||||||||||||||||||||||||||||||||  ||  || |||   |||| | ||||||| |||||||||| ||| |||||| ||    
T  23403170 tacagggaagaccccacacccctttatcccctctgttgaccaccacagttcttcattgggaccttgaagtatgaattgaaatgataagttacaatcataa 23403269  T
Q  424 cttccaatgttttttctgttgtaacgatgccaacgtatcaatacatgatctgaagttaatgtcc 487  Q
    |||||| | | || | ||||||||| ||||||||  |||||||||||||||||| |||||||||    
T  23403270 cttccactttcttgtatgttgtaaccatgccaacacatcaatacatgatctgaaattaatgtcc 23403333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 311 - 540
Target Start/End: Original strand, 23350436 - 23350668
Alignment:
Q  311 gttctaagtcatatacaggtaagaccccacacccctttatcccctctgttgaccaccacgattggtccttgtagccttcatgtatgaaatgaaatgatag 410  Q
    |||| |||||||||| |||||||||||||||||||||||||||||| || ||||||||| |||  |||||||  |||| | |||| || |||||||||||    
T  23350436 gttccaagtcatatagaggtaagaccccacacccctttatcccctcagtcgaccaccacaatttttccttgtgaccttgaagtataaattgaaatgatag 23350535  T
Q  411 gttgcaa---tcaaaacttccaatgttttttctgttgtaacgatgccaacgtatcaatacatgatctgaagttaatgtccgaatataatcatgaccaaaa 507  Q
    |||||||   ||| |||||||| | | ||   || ||||||||||||||| ||||||||| |||||| || |||||| || || |||||    || || |    
T  23350536 gttgcaaaagtcataacttccactttcttgaatgctgtaacgatgccaacatatcaatacgtgatctaaaattaatgccccaagataattgcaactaata 23350635  T
Q  508 caatgtctgtcgacttctatgccatgttcaaag 540  Q
    | |  ||||||||||||| ||||||||||||||    
T  23350636 cgacatctgtcgacttctttgccatgttcaaag 23350668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 323 - 496
Target Start/End: Original strand, 23470883 - 23471059
Alignment:
Q  323 atacaggtaagaccccacacccctttatcccctctgttgaccaccacgattggtccttgtagccttcatgtatgaaatgaaatgataggttgcaa---tc 419  Q
    ||||||||||||||||||||||||||||||||||  |||||||||   |||  || |||   |||| | ||||||| |||||||||| |||||||   ||    
T  23470883 atacaggtaagaccccacacccctttatcccctcctttgaccaccgtaattcttcattgggaccttgaagtatgaattgaaatgataagttgcaaatatc 23470982  T
Q  420 aaaacttccaatgttttttctgttgtaacgatgccaacgtatcaatacatgatctgaagttaatgtccgaatataat 496  Q
    | |||||||| | | || ||||||||||| |||||||| ||||||| ||||||||||| ||||||||| || |||||    
T  23470983 ataacttccattttcttgtctgttgtaaccatgccaacatatcaatgcatgatctgaaattaatgtcccaaaataat 23471059  T

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Target: chr3; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 323 - 487
Target Start/End: Original strand, 23438383 - 23438550
Alignment:
Q  323 atacaggtaagaccccacacccctttatcccctctgttgaccaccacgattggtccttgtagccttcatgtatgaaatgaaatgataggttgca---atc 419  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| |||  || |||    ||| ||||||||| |||||||||| |||| |   |||    
T  23438383 atacaggtaagaccccacacccctttatcccctcctttgaccaccacaattcttcattgggatcttgatgtatgaattgaaatgataagttgtaaatatc 23438482  T
Q  420 aaaacttccaatgttttttctgttgtaacgatgccaacgtatcaatacatgatctgaagttaatgtcc 487  Q
    |  ||||||| | | || ||||||||||| |||||| | ||||||||||||||||||| |||||||||    
T  23438483 attacttccattttcttgtctgttgtaaccatgccagcatatcaatacatgatctgaaattaatgtcc 23438550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23433680 - 23433749
Alignment:
Q  1 aaatcaactaataaggaatttataattagaaagtgggtgaaaaga---ataccgattgaacagcaaggat 67  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||   ||||||||||||||||||||||    
T  23433680 aaatcaactaataaagaatttataattagaaagtaggtgaaaagattcataccgattgaacagcaaggat 23433749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 487
Target Start/End: Original strand, 23382020 - 23382174
Alignment:
Q  333 gaccccacacccctttatcccctctgttgaccaccacgattggtccttgtagccttcatgtatgaaatgaaatgataggttgcaatcaaaacttccaatg 432  Q
    |||||||||||||||||| ||||| |||||||||    |||  || |||   |||| | ||||||| |||||||||| ||| |||||| |||||||| |     
T  23382020 gaccccacacccctttataccctccgttgaccactgtaattcttcattgggaccttgaagtatgaattgaaatgataagttacaatcataacttccactt 23382119  T
Q  433 ttttttctgttgtaacgatgccaacgtatcaatacatgatctgaagttaatgtcc 487  Q
    | || | ||||||||| |||||| | ||||||||||||||||||| |||||||||    
T  23382120 tcttgtatgttgtaaccatgccaccatatcaatacatgatctgaaattaatgtcc 23382174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 367
Target Start/End: Original strand, 23400700 - 23400756
Alignment:
Q  311 gttctaagtcatatacaggtaagaccccacacccctttatcccctctgttgaccacc 367  Q
    |||||||  ||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  23400700 gttctaaagcatatacaggtaagaccccacaccgttttatcccctccgttgaccacc 23400756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23476792 - 23476861
Alignment:
Q  1 aaatcaactaataaggaatttataattagaaagtgggtgaaaaga---ataccgattgaacagcaaggat 67  Q
    |||| |||||||| |||||||||||||||||||| | ||| ||||   ||||||||||||||||||||||    
T  23476792 aaataaactaatatggaatttataattagaaagtagatgagaagattcataccgattgaacagcaaggat 23476861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 36000939 - 36000981
Alignment:
Q  314 ctaagtcatatacaggtaagaccccacacccctttatcccctc 356  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  36000939 ctaagtcatatacagggaagaccccacaaccctttatcccctc 36000981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 305 - 487
Target Start/End: Original strand, 9927 - 10109
Alignment:
Q  305 actcatgttctaagtcatatacaggtaagaccccacacccctttatcccctctgttgaccaccacgattggtccttgtagccttcatgtatgaaatgaaa 404  Q
    ||||| |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| |||  || |||   |||| | ||||||| | |||    
T  9927 actcacgttctaaggcatatacaggtatgaccccacacccttttatcccctctgttgaccaccacaattcttcattgggaccttgaagtatgaatttaaa 10026  T
Q  405 tgataggttgcaatcaaaacttccaatgttttttctgttgtaacgatgccaacgtatcaatacatgatctgaagttaatgtcc 487  Q
    ||||| ||| |||||| |||||||| | | || ||| ||||||| |||||| | ||||||||||||||||||| |||||||||    
T  10027 tgataagttacaatcataacttccattttcttgtctattgtaaccatgccagcatatcaatacatgatctgaaattaatgtcc 10109  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 470
Target Start/End: Original strand, 15043187 - 15043266
Alignment:
Q  391 tgtatgaaatgaaatgataggttgcaatcaaaacttccaatgttttttctgttgtaacgatgccaacgtatcaatacatg 470  Q
    |||||||| |||||||||| ||||||||||  ||| ||| | | || | |||||||||||||||||| ||||| ||||||    
T  15043187 tgtatgaattgaaatgataagttgcaatcattactcccactctcttgtatgttgtaacgatgccaacatatcactacatg 15043266  T

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