View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21539_low_9 (Length: 380)
Name: NF21539_low_9
Description: NF21539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21539_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 38479646 - 38479285
Alignment:
| Q |
1 |
aacaacctttggccttacgagagagcctatgagtgaaattaacaagttagattccagcatgaatgaacttataatctgtatgaaacagaaacaagagaaa |
100 |
Q |
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| T |
38479646 |
aacaacctttggccttacgagagagcctatgagtgaaattaacaagttagattccagcatggatgaacttataatctgtatgaaacagaaacaagagaaa |
38479547 |
T |
|
| Q |
101 |
atgtgaaaagaaactaccaaaagataacaccaattgcagcttgtaaaagagattagatgctttataactggagaacgacttttacattaccactatcctc |
200 |
Q |
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| T |
38479546 |
atgtgaaaagaaactaccaaaagataacaccaattgcagcttgtaaaagagattagatgctttataactggaaaacgacttttacattaccactatcctc |
38479447 |
T |
|
| Q |
201 |
tagcataatgcataacatgccacccaaggacacattaaaatatttatcatttcctaaaactcaatgaatacccaaaagaatcaaataaacagggaaattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
38479446 |
tagcataatgcataacatgccacccaaggacacattaaaatatttatcatttcctaaaactcaatggatacccaaaagaatcaaataaacaggtaaattt |
38479347 |
T |
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| Q |
301 |
acccaccaagtaagtctggatacaaacataagcaataattacagaccaaatttggtggaaat |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38479346 |
acccaccaagtaagtctggatacaaacataagcaataattacagaccaaatttggtggaaat |
38479285 |
T |
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