View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2153_high_10 (Length: 237)

Name: NF2153_high_10
Description: NF2153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2153_high_10
NF2153_high_10
[»] chr3 (3 HSPs)
chr3 (3-221)||(2555200-2555418)
chr3 (133-189)||(42655979-42656035)
chr3 (156-189)||(52041209-52041242)
[»] chr6 (2 HSPs)
chr6 (139-221)||(21762237-21762319)
chr6 (141-221)||(826565-826645)
[»] chr2 (2 HSPs)
chr2 (136-221)||(22625157-22625241)
chr2 (151-221)||(10599831-10599906)
[»] chr7 (1 HSPs)
chr7 (148-221)||(6254007-6254081)
[»] chr4 (1 HSPs)
chr4 (137-191)||(24257928-24257982)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 2555418 - 2555200
Alignment:
Q  3 tcaattgggtttgtattcttaattaaattagtatgttggaaaaaccaaaaatgtggaaattgaatggttggaggtaccttgggaagaagaagtggtggaa 102  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2555418 tcaatcgggtttgtatccttaattaaattagtatgttggaaaaacaaaaaatgtggaaattgaatggttggaggtaccttgggaagaagaagtggtggaa 2555319  T
Q  103 agatcctataagacttattcgggaagatcctatataacacatgtatacatgggcatgggaaagagagtagaataatatgtgcatgagaagaataacaatc 202  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2555318 agatcctataagactgattcgggaagatcctatataacacatgtatacatgagcatgggaaagagagtagaataatatgtgcatgagaagaataacaatc 2555219  T
Q  203 acattggaaacatagaaat 221  Q
    | |||||||||||||||||    
T  2555218 atattggaaacatagaaat 2555200  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 42656035 - 42655979
Alignment:
Q  133 tatataacacatgtatacatgggcatgggaaagagagtagaataatatgtgcatgag 189  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  42656035 tatatgacacatgtatatatgggcatgggaaagagagtagaataatatgtacatgag 42655979  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 52041209 - 52041242
Alignment:
Q  156 catgggaaagagagtagaataatatgtgcatgag 189  Q
    ||||||||||||||||||||||||||| ||||||    
T  52041209 catgggaaagagagtagaataatatgtacatgag 52041242  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 21762319 - 21762237
Alignment:
Q  139 acacatgtatacatgggcatgggaaagagagtagaataatatgtgcatgagaagaataacaatcacattggaaacatagaaat 221  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||| ||||||||    
T  21762319 acacatgtatatatgggcatgggaaagagagtagaataatatgtgcatcagaacaataacagtcacgttggaaatatagaaat 21762237  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 826565 - 826645
Alignment:
Q  141 acatgtatacatgggcatgggaaagagagtagaataatatgtgcatgagaagaataacaatcacattggaaacatagaaat 221  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||| ||||||||    
T  826565 acatgtatatatgggcatgggaaagagagtagaataatatgtgcatcagaacaataacagtcacgttggaaatatagaaat 826645  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 22625157 - 22625241
Alignment:
Q  136 ataacacatgtatacatgggcatgggaaagagagtagaataatatgtgcatgagaagaataacaatcacattggaaacatagaaat 221  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||||  ||||||||||||||||    
T  22625157 ataacacatgtatacatgggcatgggaaagatagtagaataaaatgtgcatga-aacaataacaatcatgttggaaacatagaaat 22625241  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 10599831 - 10599906
Alignment:
Q  151 atgggcatgggaaagagagtagaata---atatgtgcat-gagaagaataac-aatcacattggaaacatagaaat 221  Q
    ||||||||||||||||||| ||||||   |||||||||| ||||| | |||| |||||| ||||||||||||||||    
T  10599831 atgggcatgggaaagagagaagaataaatatatgtgcatggagaacactaacaaatcacgttggaaacatagaaat 10599906  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 6254081 - 6254007
Alignment:
Q  148 tacatgggcatgggaaagagagtagaataatatgtgcat-gagaagaataacaatcacattggaaacatagaaat 221  Q
    ||||||||||||| ||||||||||||||||||||||||| || || |||||||||||  ||||||||||||||||    
T  6254081 tacatgggcatggtaaagagagtagaataatatgtgcatggaaaacaataacaatcatgttggaaacatagaaat 6254007  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 24257982 - 24257928
Alignment:
Q  137 taacacatgtatacatgggcatgggaaagagagtagaataatatgtgcatgagaa 191  Q
    |||| |||||||  ||||||||||||||||||||||||||| || ||||||||||    
T  24257982 taacgcatgtatgtatgggcatgggaaagagagtagaataaaatctgcatgagaa 24257928  T

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