View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2153_high_2 (Length: 523)
Name: NF2153_high_2
Description: NF2153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2153_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Complemental strand, 43853155 - 43852655
Alignment:
| Q |
19 |
tgtagagggtgattatccaagataagattagaatcaccacaccaggacccctgcaattcgacattgtaaaacataaacaaacttatgtttcattgtgatt |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43853155 |
tgtagagggtgattatccatgataagattagaatcaccacaccaggacccctgcaattcgacattgtaaaacataaacaaacttatgtttcattgtgatt |
43853056 |
T |
|
| Q |
119 |
taaacgtccttgagatgtcaaattagtggtaatagtttcacaattattttttgtgttaacccttcggtcctaatgggaaagaggtcctgataatccaaag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43853055 |
taaacgtccttgagatgtcaaattagtggtaatagtttcacaattattttttgtgttaacccttcggtcctaatgggaaagaggtcctgataatccaaag |
43852956 |
T |
|
| Q |
219 |
tttggtcaggagataagtaagttttgactaagaaatgttcatccaggaatcaaacttagattctcctgaacgattcgtcattcaattcatttgggaggta |
318 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43852955 |
tttggtcagaagataagtaagttttgactaaaaaatgttcatccaggaatcaaacttagattctcctgaacgattcgtcattcaattcatttgggaggta |
43852856 |
T |
|
| Q |
319 |
atagtgtcacaatataatctcaagagacgaaatttaaatccctggaaggaggttatataattgtcattaattagtgtcacttcgactaataaaaactttc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43852855 |
atagtgtcacaatataatctcaagagacgaaatttaaatccctggagggaggttatataattgtcattaattagtgtcacttcgactaataaaaactttc |
43852756 |
T |
|
| Q |
419 |
atcttccttgttctttttt-----nnnnnnnnncaagaagagattaagaatatatatgatcttatttcaagttgttttcactttatttcaatgagaataa |
513 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43852755 |
atcttccatgttctttttttaaaataaaaaaaaaaaaaagagattaagaatatatatgatcttatttcaagttgttttcactttatttcaatgagaataa |
43852656 |
T |
|
| Q |
514 |
t |
514 |
Q |
| |
|
| |
|
|
| T |
43852655 |
t |
43852655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University