View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2153_low_12 (Length: 246)

Name: NF2153_low_12
Description: NF2153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2153_low_12
NF2153_low_12
[»] chr1 (3 HSPs)
chr1 (2-222)||(44128288-44128508)
chr1 (2-222)||(44132493-44132713)
chr1 (2-222)||(44140915-44141135)
[»] chr5 (7 HSPs)
chr5 (117-222)||(1504807-1504911)
chr5 (4-70)||(1504476-1504542)
chr5 (1-64)||(1491709-1491772)
chr5 (173-212)||(1482078-1482117)
chr5 (2-65)||(1477709-1477772)
chr5 (173-212)||(1477884-1477923)
chr5 (29-69)||(1481847-1481887)
[»] chr7 (11 HSPs)
chr7 (147-219)||(46707179-46707251)
chr7 (1-65)||(5290081-5290145)
chr7 (1-65)||(5302170-5302234)
chr7 (1-65)||(5283982-5284046)
chr7 (1-65)||(5309807-5309871)
chr7 (173-222)||(5310282-5310331)
chr7 (173-221)||(5284193-5284241)
chr7 (1-65)||(5314624-5314688)
chr7 (173-221)||(5314996-5315044)
chr7 (173-221)||(5289886-5289934)
chr7 (173-221)||(5302381-5302429)
[»] chr3 (3 HSPs)
chr3 (5-61)||(37863716-37863772)
chr3 (5-61)||(37859726-37859782)
chr3 (5-61)||(39029635-39029691)
[»] chr2 (1 HSPs)
chr2 (177-218)||(24163982-24164023)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 44128288 - 44128508
Alignment:
Q  2 aaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtattttttccctctaccttagatactttccatttaaatat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44128288 aaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtattttttccctctaccttagatactttccatttaaatat 44128387  T
Q  102 attttgctatctttacattggtttcttatcacccaagttttgttgaactaatatcatcttttcataattcccttcaggtgataaatctatgatcaagagg 201  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44128388 attttgctatctttacattggtttcttaacacccaagttttgttgaactaatatcatcttttcataattcccttcaggtgataaatctatgatcaagagg 44128487  T
Q  202 agatatatgtacctaacagag 222  Q
    |||||||||||||||||||||    
T  44128488 agatatatgtacctaacagag 44128508  T

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Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 44132493 - 44132713
Alignment:
Q  2 aaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtattttttccctctaccttagatactttccatttaaatat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44132493 aaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtattttttccctctaccttagatactttccatttaaatat 44132592  T
Q  102 attttgctatctttacattggtttcttatcacccaagttttgttgaactaatatcatcttttcataattcccttcaggtgataaatctatgatcaagagg 201  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44132593 attttgctatctttacattggtttcttaacacccaagttttgttgaactaatatcatcttttcataattcccttcaggtgataaatctatgatcaagagg 44132692  T
Q  202 agatatatgtacctaacagag 222  Q
    |||||||||||||||||||||    
T  44132693 agatatatgtacctaacagag 44132713  T

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Target: chr1; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 44140915 - 44141135
Alignment:
Q  2 aaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtattttttccctctaccttagatactttccatttaaatat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44140915 aaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtattttttccctctaccttagatactttccatttaaatat 44141014  T
Q  102 attttgctatctttacattggtttcttatcacccaagttttgttgaactaatatcatcttttcataattcccttcaggtgataaatctatgatcaagagg 201  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141015 attttgctatctttacattggtttcttaacacccaagttttgttgaactaatatcatcttttcataattcccttcaggtgataaatctatgatcaagagg 44141114  T
Q  202 agatatatgtacctaacagag 222  Q
    |||||||||||||||||||||    
T  44141115 agatatatgtacctaacagag 44141135  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 1504807 - 1504911
Alignment:
Q  117 cattggtttcttatcacccaagttttgttgaactaatatcatcttttcataattcccttcaggtgataaatctatgatcaagaggagatatatgtaccta 216  Q
    ||||| |||| |||||||||| ||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  1504807 cattgatttcgtatcacccaaattt-gttgaactaatatcatctcttcataattaccttcaggtgataaatctatgattaagagaagatacatgtaccta 1504905  T
Q  217 acagag 222  Q
    ||||||    
T  1504906 acagag 1504911  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 1504476 - 1504542
Alignment:
Q  4 aatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtattttttc 70  Q
    ||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||    
T  1504476 aatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaagtgttttttc 1504542  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1491709 - 1491772
Alignment:
Q  1 taaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtat 64  Q
    ||||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||||||||||||    
T  1491709 taaaatcacaaatagcgaacacaaaactgagctcaaagaaaaatttcaacgcatgtgtaagtat 1491772  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 1482078 - 1482117
Alignment:
Q  173 cttcaggtgataaatctatgatcaagaggagatatatgta 212  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  1482078 cttcaggtgataaatctatgatcaagaggagatacatgta 1482117  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 1477709 - 1477772
Alignment:
Q  2 aaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 65  Q
    ||||||||||| ||||| |||||   |||||| ||||| ||||| |||||||||||||||||||    
T  1477709 aaaatcacaaacagtgagcacaaagttgaacttaaagaaaaatttcaacgcatgtgtaagtatt 1477772  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 1477884 - 1477923
Alignment:
Q  173 cttcaggtgataaatctatgatcaagaggagatatatgta 212  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  1477884 cttcaggtgataaatccatgatcaagaggagatacatgta 1477923  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 1481847 - 1481887
Alignment:
Q  29 gaactcaaagagaaattccaacgcatgtgtaagtatttttt 69  Q
    ||||||||||| ||||| ||||||||||||||||| |||||    
T  1481847 gaactcaaagaaaaatttcaacgcatgtgtaagtacttttt 1481887  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 46707251 - 46707179
Alignment:
Q  147 aactaatatcatcttttcataattcccttcaggtgataaatctatgatcaagaggagatatatgtacctaaca 219  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46707251 aactaatatcatcctatcataattaccttcaggtgataaatctatgatcaagaggagatacatgtacctaaca 46707179  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 5290145 - 5290081
Alignment:
Q  1 taaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 65  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||    
T  5290145 taaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagtatt 5290081  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5302170 - 5302234
Alignment:
Q  1 taaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 65  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||    
T  5302170 taaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagtatt 5302234  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5283982 - 5284046
Alignment:
Q  1 taaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 65  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||| || ||||||||||||||||    
T  5283982 taaaatcacaaacagtgaacacaaaactgaacttaaagagaaatttcagcgcatgtgtaagtatt 5284046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5309807 - 5309871
Alignment:
Q  1 taaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 65  Q
    |||||||||||||||||||||||| |||||||| || |||||||| || ||||||||||||||||    
T  5309807 taaaatcacaaatagtgaacacaaaactgaacttaaggagaaatttcagcgcatgtgtaagtatt 5309871  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 5310282 - 5310331
Alignment:
Q  173 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacagag 222  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  5310282 cttcaggtgataaatctatgatcaagaggagatacatgtatctaacagag 5310331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 5284193 - 5284241
Alignment:
Q  173 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacaga 221  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  5284193 cttcaggtgataaatctatgatcaagaggagatacatgtatctaacaga 5284241  T

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Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5314624 - 5314688
Alignment:
Q  1 taaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 65  Q
    |||||| |||||||||||||||||   |||||||||||||||||| || ||||||||||||||||    
T  5314624 taaaattacaaatagtgaacacaaagttgaactcaaagagaaatttcagcgcatgtgtaagtatt 5314688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 5314996 - 5315044
Alignment:
Q  173 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacaga 221  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  5314996 cttcaggtgataaatctatgatcaagaggagatacatgtatctaacaga 5315044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 5289934 - 5289886
Alignment:
Q  173 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacaga 221  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  5289934 cttcaggtgataaatccatgatcaagaggagatacatgtatctaacaga 5289886  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 5302381 - 5302429
Alignment:
Q  173 cttcaggtgataaatctatgatcaagaggagatatatgtacctaacaga 221  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  5302381 cttcaggtgataaatccatgatcaagaggagatacatgtatctaacaga 5302429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 37863772 - 37863716
Alignment:
Q  5 atcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaag 61  Q
    |||||||| ||||||||||| |||||||||| ||| |||||||| ||||||||||||    
T  37863772 atcacaaacagtgaacacaaaactgaactcagagaaaaattccagcgcatgtgtaag 37863716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 37859782 - 37859726
Alignment:
Q  5 atcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaag 61  Q
    |||||||| |||||||| |||||||| |||||||| ||||| || ||||||||||||    
T  37859782 atcacaaacagtgaacataagactgagctcaaagaaaaatttcagcgcatgtgtaag 37859726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 39029635 - 39029691
Alignment:
Q  5 atcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaag 61  Q
    |||||||||||||| |||||||| || || ||||| ||||| || ||||||||||||    
T  39029635 atcacaaatagtgagcacaagacagagctgaaagaaaaatttcagcgcatgtgtaag 39029691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 24164023 - 24163982
Alignment:
Q  177 aggtgataaatctatgatcaagaggagatatatgtacctaac 218  Q
    |||||||||| ||||||||||||||||||| |||||||||||    
T  24164023 aggtgataaaactatgatcaagaggagatacatgtacctaac 24163982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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