View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2153_low_15 (Length: 236)
Name: NF2153_low_15
Description: NF2153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2153_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 40405521 - 40405741
Alignment:
| Q |
16 |
atagcaccatgaagcttatttctaaacaaattcaaaagtgtcagattcttcaactcagcaaaactcaccggaacttcaccggtgaaagcattattcgaca |
115 |
Q |
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| T |
40405521 |
atagcaccatgaagcttatttctaaacaaattcaaaagtgtcagattcttcaactcagcaaaactcaccggaacttcacctgtgaaagcattattcgaca |
40405620 |
T |
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| Q |
116 |
aatccatcgatttcaagcttttcaagttccctaactccgatgtaagcgacccagaaagtgcatttacttgaagaaacaaagtatccaacttctgaagctt |
215 |
Q |
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| T |
40405621 |
aatccatcgatttcaagcttttcaagttccctaactccgatgtaagcgacccagaaagtgcatttacttgaagaaacaaagtatccaacttctgaagctt |
40405720 |
T |
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| Q |
216 |
acccaactccggtggcacttc |
236 |
Q |
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| T |
40405721 |
acccaactccggtggcacttc |
40405741 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 4977787 - 4977610
Alignment:
| Q |
16 |
atagcaccatgaagcttatttctaaacaaattcaaaagtgtcagattcttcaactcagcaaaactcaccggaacttcaccggtgaaagcattattcgaca |
115 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||| | |||||||| ||| | |||||| ||||| |||||||| || ||||| |||| |
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| T |
4977787 |
atagcaccatgaagcttgtttctgaacaaattcaaaagtgttaaattcttcagttcaccgaaactcgtcggaatctcaccggttaacatgttattagaca |
4977688 |
T |
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| Q |
116 |
aatccatcgatttcaagcttttcaagttccctaactccgatgtaagcgacccagaaagtgcatttacttgaagaaaca |
193 |
Q |
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||||||| ||||| ||||| ||||| || || | ||| |||| | || || ||||||||||| || |||||||||| |
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| T |
4977687 |
aatccattgattttaagctcttcaaatttccaagttcccatgttaaagagcctgaaagtgcattcacctgaagaaaca |
4977610 |
T |
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