View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2153_low_3 (Length: 424)
Name: NF2153_low_3
Description: NF2153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2153_low_3 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 48967840 - 48967922
Alignment:
| Q |
19 |
aacaacaccattgtttacccaataaaaccacaaaaatacaaatttaaataatttaccgtcaatttgaatgagatagaaacaaa |
101 |
Q |
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| T |
48967840 |
aacagcaccattatttacccaataaaaccacaaaaatacaaatttaagtaatttaacgtaaatttaaatgagatagaaacaaa |
48967922 |
T |
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 11503849 - 11503765
Alignment:
| Q |
18 |
aaacaacaccattgtttacccaataaaaccacaaaaa-tacaaatttaaataatttaccgtcaatttgaatgagatagaaacaaa |
101 |
Q |
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| T |
11503849 |
aaacatcaccattgtttatccaataaagacacaaaaaatacaaatttaattaacttaccatcagtttaaatgagatagaaacaaa |
11503765 |
T |
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Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 81701 - 81747
Alignment:
| Q |
19 |
aacaacaccattgtttacccaataaaaccacaaaaatacaaatttaa |
65 |
Q |
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| T |
81701 |
aacaataccattatttacccaataaaaccacaaaaatacaaatttaa |
81747 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 336
Target Start/End: Original strand, 27277321 - 27277429
Alignment:
| Q |
226 |
atttgatgtgtgattctcgtcagcgtatgttcaatttctcaactcacggttctcgcagtagttttcggtgaggaagccggaactggaggagatgaggatg |
325 |
Q |
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| T |
27277321 |
atttgatgtgagattctcttcatggtatgttca--ttctcaacacactgttatcgcggaggtttccggtgaggtggccggaactcgaggcgatgaggatg |
27277418 |
T |
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| Q |
326 |
aagaaatgcag |
336 |
Q |
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| T |
27277419 |
aagaaaagcag |
27277429 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 337
Target Start/End: Original strand, 22141853 - 22141961
Alignment:
| Q |
226 |
atttgatgtgtgattctcgtcagcgtatgttcaatttctcaactcacggttctcgcagtagttttcggtgaggaagccggaactggaggagatgaggatg |
325 |
Q |
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| T |
22141853 |
atttgatgtgagattctcttcaaggtatgatcact--ctcaactcactgttatcgcggtggttttcggtgaagc-gccgaaactgtaggtgatgaggatg |
22141949 |
T |
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| Q |
326 |
aagaaatgcagc |
337 |
Q |
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| T |
22141950 |
aagaaaagcagc |
22141961 |
T |
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