View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2153_low_4 (Length: 364)
Name: NF2153_low_4
Description: NF2153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2153_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 31509262 - 31509597
Alignment:
| Q |
17 |
atattggtgtttgagaaggaaaatgagaaaggaatgtacaaaatcacttcttttgttgaaacaaattgatgggtcaatagggtcatcannnnnnncattg |
116 |
Q |
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| T |
31509262 |
atattggtgtttgagaaggaaaatgagaaaggaatgtacaaaatcacttcttttgttgaaacaaattgatgggtcaattggatcatcatttttttcattg |
31509361 |
T |
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| Q |
117 |
gatcttaataatcacctttgttcaattgtaaaagtgcttattgaagctagtttgattactagttcaatccttcaatcacttgttgtgtttctttcttcac |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31509362 |
gatcttaataatcatctttgttcaattgtaaaagtgcttattgaagctagtttgattactagttcaatccttcaatcacttgttgtgtttctttcttcac |
31509461 |
T |
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| Q |
217 |
caattttgagatcaaaggttaataaatggtcattggtttcaaggttgatgcagaagggtgtgtttggttgtgataatcaaaatgagaatattaatgagtt |
316 |
Q |
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| T |
31509462 |
caattttgagatcaaaggttaataaatggtcattggtttcaaggttgatgcagaagggtgtgtttggttgtgataatcaaaatgagaatattaatgagtt |
31509561 |
T |
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| Q |
317 |
ggaaaaagtggattttggagttagtagtttgatgat |
352 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31509562 |
ggaaaaagtggattttggagttagtagtttgatgat |
31509597 |
T |
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