View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2153_low_5 (Length: 364)
Name: NF2153_low_5
Description: NF2153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2153_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 3 - 347
Target Start/End: Complemental strand, 25468752 - 25468408
Alignment:
| Q |
3 |
tgcattcaaccctttaaaaatagtataactgatttgttagatagacctcatttgttattaagggatacagccattttagtttctgattatgaattttgtt |
102 |
Q |
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| T |
25468752 |
tgcattcaaccctttaaaaaaagtataagtgatttgttagatagacctcatttgttattaaggaatacaaccattttagtctctgactatgcattgtgct |
25468653 |
T |
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| Q |
103 |
gttaaaatggtccctactcgggataaaatgtaaaatagtccctggatgtatacctatgttaaccaattaagtccttgacgttaaaattgaccattcaaag |
202 |
Q |
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| T |
25468652 |
gtcaaaatggtccctactcgggataaaatgtaaaatagtccctgaatgtatacctatgttaaccaattaagtccttgacgttaaaattgaccattaaaag |
25468553 |
T |
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| Q |
203 |
atgagctgacaattgttttgacaatcaaggatgtatgatgtggatccatggactaaagtgacaaaaaacaattagaaattatcataatgcaaaatagtac |
302 |
Q |
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| T |
25468552 |
atgagctgacaattgttttgacaatcaaggatgtatgatgtggatctatggactaaagtgacaaaaaacaattagaaattatcataatgcaaaatagtac |
25468453 |
T |
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| Q |
303 |
aattttgttttaaactgatttatgtaaaattctactgttaatggt |
347 |
Q |
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| T |
25468452 |
aattgtgttttaaactgatttatgtgaaattctactgttaatggt |
25468408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 175
Target Start/End: Complemental strand, 25473811 - 25473667
Alignment:
| Q |
32 |
tgatttgttagatagacctcatttgttattaagggatacagccattttagtttctgattatgaattttgttgttaaaatggtccct-actcgggataaaa |
130 |
Q |
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| T |
25473811 |
tgatttgttaaatagacctcatttgttattaagggatacaaccattttggtccctgaccatgcatatcgctgtcacaatggtccctgactcaagataaaa |
25473712 |
T |
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| Q |
131 |
tgtaaaatagtccctggatgtatacctatgttaaccaattaagtc |
175 |
Q |
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| T |
25473711 |
tgtaaaatagtccctagatgtgtacctctgttagccaattaagtc |
25473667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 7626381 - 7626309
Alignment:
| Q |
118 |
actcgggataaaatgtaaaatagtccctggatgtatacctatgttaaccaattaagtccttgacgttaaaatt |
190 |
Q |
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| T |
7626381 |
actcaggataaaatgtaaaatagtttttggatgtatacttctgttaaccaatttaatccttgacgtttaaatt |
7626309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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