View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2153_low_6 (Length: 362)
Name: NF2153_low_6
Description: NF2153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2153_low_6 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 5593556 - 5593213
Alignment:
| Q |
19 |
gtatcaggagtagtgcgtatgtctatttaatgtaaagtagcttgccaaaaataaacatgtcttcatcttgttatcggctagtaccttagttatattttct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593556 |
gtatcaggagtagtgcgtatgtctatttaatgtaaagtagcttgccaaaaataaacatgtcttcatcttgttatcggctagtaccttagttatattttct |
5593457 |
T |
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| Q |
119 |
tcttagatatggaatctatgataaagccatggttggtgtttccaatttttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagt |
218 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593456 |
tcttagagatggaatctatgataaagccatggttggtgtttcctattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagt |
5593357 |
T |
|
| Q |
219 |
tccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593356 |
tccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatc |
5593257 |
T |
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| Q |
319 |
gacttcccgatgggcccaaccggaagatttaccaacggtcgaac |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593256 |
gacttcccgatgggcccaaccggaagatttaccaacggtcgaac |
5593213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 112 - 248
Target Start/End: Complemental strand, 5582971 - 5582835
Alignment:
| Q |
112 |
attttcttcttagatatggaatctatgataaagccatggttggtgtttccaatttttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaat |
211 |
Q |
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|||||||||||||| ||||| ||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5582971 |
attttcttcttagagatggattctataataaagacatggttggtgtttcctattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaat |
5582872 |
T |
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| Q |
212 |
cccaagttccttgtctttttatctttggagattcttt |
248 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
5582871 |
cccaagttccttgtctttttatctttggagattcttt |
5582835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 120 - 362
Target Start/End: Complemental strand, 5587219 - 5586980
Alignment:
| Q |
120 |
cttagatatggaatctatgataaagccatggttggtgtttccaatttttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagtt |
219 |
Q |
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|||| ||||||||| ||| || ||| ||||||||| ||| ||| || |||| ||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
5587219 |
cttaaatatggaatttataatcaagaaatggttggtagttcttattgttttcttttctgcaaactatttgcaacaatgtgtcaatgggaaatcccaagtg |
5587120 |
T |
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| Q |
220 |
ccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcg |
319 |
Q |
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|||||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||| ||| |||| ||| ||| ||||||||||| || || |||| |
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| T |
5587119 |
ccttgtctatttatctttggagactctttatctgatagtggaaacaacaataaccttc---ctacctctgcaaaatctaattacaatccctatggaatcg |
5587023 |
T |
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| Q |
320 |
acttcccgatgggcccaaccggaagatttaccaacggtcgaac |
362 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
5587022 |
actttccgatgggcccaactggaagatttaccaacggtcgaac |
5586980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 114 - 362
Target Start/End: Complemental strand, 5573694 - 5573449
Alignment:
| Q |
114 |
tttcttcttagatatggaatctatgataaagccatggttggtgtttccaatttttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcc |
213 |
Q |
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|||||||||||| ||||||||||| || || ||||||||||| ||| ||| || ||||||||||||||||||| | |||| ||||||||||||||| |
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| T |
5573694 |
tttcttcttagagatggaatctataatcaaaacatggttggtggttcttattgttttcttgtctgcaaactattttaaacaatgtgtcaatgggaaatct |
5573595 |
T |
|
| Q |
214 |
caagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacg |
313 |
Q |
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||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||| ||| ||| |||||||| ||||| | |
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| T |
5573594 |
caagtgccttgtgtatttatctttggagattctttatctgatagtggaaacaacaataaccttc---ctacctctgcaaaatctaattacaaaccttatg |
5573498 |
T |
|
| Q |
314 |
ggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaac |
362 |
Q |
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| || ||||| |||||||| |||||||||||||||||||||||| |||| |
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| T |
5573497 |
gaattgactttccgatgggtccaaccggaagatttaccaacggtagaac |
5573449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 170 - 362
Target Start/End: Complemental strand, 5576800 - 5576611
Alignment:
| Q |
170 |
tcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaa |
269 |
Q |
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|||| ||||||||||||||||| |||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
5576800 |
tcttttctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagattctttatctgatagtggaaacaataa |
5576701 |
T |
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| Q |
270 |
caaccttcctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaac |
362 |
Q |
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||||||||| | |||| ||| ||| |||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5576700 |
caaccttcccac---ctctgcaaaatctaattacaaaccttatggaattgacttcccgatgggcccaaccggaagatttaccaacggtcgaac |
5576611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 279
Target Start/End: Original strand, 12051663 - 12051830
Alignment:
| Q |
112 |
attttcttcttagatatggaatctatgataaagccatggttggtgtttccaatttttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaat |
211 |
Q |
| |
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|||||||||||||| | |||||||||||| ||| ||||||||||| | | ||| || || |||| ||||||||||| || || |||| ||| ||||| |
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| T |
12051663 |
attttcttcttagagacggaatctatgatcaagacatggttggtgatgcttattcttttcatgtccgcaaactatttacaacacagtgtctatgagaaat |
12051762 |
T |
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| Q |
212 |
cccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcct |
279 |
Q |
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||||| ||| |||| ||||||||||| || ||||||| |||| ||| ||||||||| ||||||||| |
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| T |
12051763 |
atcaagtacctagtctgtttatctttggggactctttatatgatagtgaaaacaacaataaccttcct |
12051830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 12059091 - 12059139
Alignment:
| Q |
108 |
ttatattttcttcttagatatggaatctatgataaagccatggttggtg |
156 |
Q |
| |
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|||||||||||||||||| | |||||||||||| ||| ||||||||||| |
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| T |
12059091 |
ttatattttcttcttagagacggaatctatgatcaagacatggttggtg |
12059139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 12064543 - 12064591
Alignment:
| Q |
108 |
ttatattttcttcttagatatggaatctatgataaagccatggttggtg |
156 |
Q |
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| T |
12064543 |
ttatattttcttcttagagacggaatctatgatcaagacatggttggtg |
12064591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 36358051 - 36357988
Alignment:
| Q |
212 |
cccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaacct |
275 |
Q |
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||||||| || |||||||| || ||||||||||||||||| || ||||||||||||| ||||| |
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| T |
36358051 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacct |
36357988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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