View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2153_low_8 (Length: 315)
Name: NF2153_low_8
Description: NF2153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2153_low_8 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 2272742 - 2272445
Alignment:
| Q |
18 |
atgaacatcaacatatattcactttgtcttggacacgaacattaagtctgtccttaaacattattcattcttctgctatttatgaaaaagaatggtaaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272742 |
atgaacatcaacatatattcactttgtcttggacacgaacattaagtctgtccttaagcattattcattcttctgctatttatgaaaaagaatggtaaaa |
2272643 |
T |
|
| Q |
118 |
ttagacaccgagccaaatctcgtaaattattctacattcctagagcgaggataaagatgaatcaatttccaccgtcaattcaataattataaactagtca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272642 |
ttagacaccgagccaaatctcgtaaattattctacattcctagagcgaggataaagatgaatcaatttccaccgtcaattcaataattataaactagtca |
2272543 |
T |
|
| Q |
218 |
gatgaattaaacagatagattcctcttggatttgtgtgaatccttgagcaaaactttctgatggatcatgactcatgatctgtccattagccaaacca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
2272542 |
gatgaattaaacagatagattcctcttggatttgtgtgaatccttgagcaaaactttctgatggatcatgaatcatgatctgtaaaatagccaaacca |
2272445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 40772478 - 40772552
Alignment:
| Q |
154 |
ttcctagagcgaggataaagatgaatcaatttccaccgtcaattcaataattataaactagtcagatgaattaaa |
228 |
Q |
| |
|
|||||| |||||| ||||||| ||||||||||||| ||||||||||||| | ||||||||||||||| |||||| |
|
|
| T |
40772478 |
ttcctaaagcgagaataaagaggaatcaatttccattgtcaattcaataactgtaaactagtcagatggattaaa |
40772552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University