View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21540_high_12 (Length: 277)

Name: NF21540_high_12
Description: NF21540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21540_high_12
NF21540_high_12
[»] chr6 (1 HSPs)
chr6 (13-259)||(25521752-25521998)
[»] chr5 (7 HSPs)
chr5 (32-253)||(42124646-42124867)
chr5 (32-254)||(34231540-34231762)
chr5 (34-189)||(34239357-34239512)
chr5 (58-159)||(41712465-41712565)
chr5 (129-193)||(42118314-42118378)
chr5 (117-245)||(41570754-41570882)
chr5 (129-195)||(42130046-42130112)
[»] chr2 (1 HSPs)
chr2 (32-189)||(12249620-12249777)
[»] chr4 (4 HSPs)
chr4 (32-193)||(11119216-11119377)
chr4 (129-259)||(11119529-11119659)
chr4 (129-189)||(11119385-11119445)
chr4 (129-193)||(11119457-11119521)
[»] chr3 (1 HSPs)
chr3 (126-253)||(8524198-8524325)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 25521998 - 25521752
Alignment:
Q  13 aatataacaacttaagaccagtcaagttaaataatgaagatggaatttgtccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatccc 112  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25521998 aatataacaacttaagaccagtcaatttaaataacgaagatggaatctgtccttctaatttgttaaaatatagatcgagttcttgcaatttggtcatccc 25521899  T
Q  113 actgaacacatctgggatttgacctctaaatgaattgtatgaaagatccaagcgaatgagatgttgaaggtttgaaagtgatgttggcaattctccttca 212  Q
    || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25521898 accgaacacgtctgggatttgacctctaaatgaattgtatgaaagatccaagcgaatgagatgttgaaggtttgaaagtgatgttggcaattctccttca 25521799  T
Q  213 aaattgttatcactcaaatctaatacttgaaatttgtttgacgtctg 259  Q
    || ||||||| ||| |||||||||||||||||||||||||| |||||    
T  25521798 aatttgttataactaaaatctaatacttgaaatttgtttgatgtctg 25521752  T

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Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 32 - 253
Target Start/End: Original strand, 42124646 - 42124867
Alignment:
Q  32 agtcaagttaaataatgaagatggaatttgtccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatcccactgaacacatctgggatt 131  Q
    |||||||||||||| |||||||||||||||||||||||| |||||  ||  || |||||||||||||||||||||||||||||  |||||||||||||||    
T  42124646 agtcaagttaaatagtgaagatggaatttgtccttctaaattgttggaagttaaatcgagttcttgcagtttggtcatcccaccaaacacatctgggatt 42124745  T
Q  132 tgacctctaaatgaattgtatgaaagatccaagcgaatgagatgttgaaggtttgaaagtgatgttggcaattctccttcaaaattgttatcactcaaat 231  Q
    ||||| |||||||||||  |   |||||||||| ||||||| ||| ||||||||||||||||||||||||  || |||||||  |||||| | |||||||    
T  42124746 tgaccactaaatgaattccacccaagatccaagtgaatgagttgtcgaaggtttgaaagtgatgttggcagctcaccttcaattttgttacctctcaaat 42124845  T
Q  232 ctaatacttgaaatttgtttga 253  Q
    ||||| ||||||||||||||||    
T  42124846 ctaattcttgaaatttgtttga 42124867  T

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Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 34231762 - 34231540
Alignment:
Q  32 agtcaagttaaataatgaagatggaatttgtccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatcccactgaacacatctgggatt 131  Q
    |||||| |||||||| |||  ||||||||||||| |||| |||||  ||||||||  |||||||||||||||||||||||| |  || |||||||| |||    
T  34231762 agtcaacttaaataaggaaagtggaatttgtcctactaaattgtttgaatatagacggagttcttgcagtttggtcatcccgccaaatacatctggaatt 34231663  T
Q  132 tgacctctaaatgaattgtatgaaagatccaagcgaatgagatgttgaaggtttgaaagtgatgttggcaattctccttcaaaattgttatcactcaaat 231  Q
    ||||| || ||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||| | ||| ||| |||  |||||| |||||||||    
T  34231662 tgaccgcttaatgaattgtatgaaagatccaagttaatgagatgtcgaaggtttgaaagtgatgttggtagttcacctccaatcttgttaccactcaaat 34231563  T
Q  232 ctaatacttgaaatttgtttgac 254  Q
    ||| || ||||||||||||||||    
T  34231562 ctattatttgaaatttgtttgac 34231540  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 34239512 - 34239357
Alignment:
Q  34 tcaagttaaataatgaagatggaatttgtccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatcccactgaacacatctgggatttg 133  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||  ||||| || | |||||||||||||||||| ||  || ||||||||||||||    
T  34239512 tcaagttaaataatgaagatggaatttgtccttctaatttgttagaagctagatagaatacttgcagtttggtcatcctaccaaatacatctgggatttg 34239413  T
Q  134 acctctaaatgaattgtatgaaagatccaagcgaatgagatgttgaaggtttgaaa 189  Q
    ||| |||| |||||||  |||||||| |||| | ||||||| ||||||||||||||    
T  34239412 accgctaagtgaattgcctgaaagatacaagtggatgagattttgaaggtttgaaa 34239357  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 41712565 - 41712465
Alignment:
Q  58 tttgtccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatcccactgaacacatctgggatttgacctctaaatgaattgtatgaaag 157  Q
    ||||||||| ||| |||||| | | |||||  |||||||||| ||||||||||||||  ||||||||||| |||||||| |||||||||||| |||||||    
T  41712565 tttgtccttttaaattgttagactctagatacagttcttgca-tttggtcatcccaccaaacacatctggtatttgaccgctaaatgaattgaatgaaag 41712467  T
Q  158 at 159  Q
    ||    
T  41712466 at 41712465  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 42118314 - 42118378
Alignment:
Q  129 atttgacctctaaatgaattgtatgaaagatccaagcgaatgagatgttgaaggtttgaaagtga 193  Q
    |||||||| |||||||||||| | |||||||||||| ||||||| ||||||||||||||||||||    
T  42118314 atttgaccactaaatgaattggaagaaagatccaagtgaatgagttgttgaaggtttgaaagtga 42118378  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 245
Target Start/End: Complemental strand, 41570882 - 41570754
Alignment:
Q  117 aacacatctgggatttgacctctaaatgaattgtatgaaagatccaagcgaatgagatgttgaaggtttgaaagtgatgttggcaattctccttcaaaat 216  Q
    ||||| ||||| |||||||| || ||||||||| |||| || || ||   || |||||||||||||||||||||||||||||| |  || ||| |||  |    
T  41570882 aacacgtctggaatttgaccactgaatgaattggatgacaggtctaaattaacgagatgttgaaggtttgaaagtgatgttggaagatcacctccaattt 41570783  T
Q  217 tgttatcactcaaatctaatacttgaaat 245  Q
    ||||| | |||||||||| | ||||||||    
T  41570782 tgttaccgctcaaatctagttcttgaaat 41570754  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 42130046 - 42130112
Alignment:
Q  129 atttgacctctaaatgaattgtatgaaagatccaagcgaatgagatgttgaaggtttgaaagtgatg 195  Q
    |||||||| |||||  |||| | ||||||||| ||| ||||||||||||||||||||| ||||||||    
T  42130046 atttgaccgctaaacaaattttttgaaagatctaagtgaatgagatgttgaaggtttggaagtgatg 42130112  T

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Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 32 - 189
Target Start/End: Original strand, 12249620 - 12249777
Alignment:
Q  32 agtcaagttaaataatgaagatggaatttgtccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatcccactgaacacatctgggatt 131  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||  ||  ||||| |||||||||||||||||||||| |||| ||||||||||| |||    
T  12249620 agtcaagttaaataatgaaaacggaatttgtccttgtaatttgtttgaagctagattgagttcttgcagtttggtcatcgcactaaacacatctggtatt 12249719  T
Q  132 tgacctctaaatgaattgtatgaaagatccaagcgaatgagatgttgaaggtttgaaa 189  Q
    ||||| |||||||||||| |||||||||||| | |||||||| |||||||||||||||    
T  12249720 tgaccgctaaatgaattgaatgaaagatccacgtgaatgagacgttgaaggtttgaaa 12249777  T

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Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 32 - 193
Target Start/End: Original strand, 11119216 - 11119377
Alignment:
Q  32 agtcaagttaaataatgaagatggaatttgtccttctaatttgttaaaatatagatcgagttcttgcagtttggtcatcccactgaacacatctgggatt 131  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| ||| ||  ||||||||||||||||| ||||||||||  ||||||||||| |||    
T  11119216 agtcaagttaaataatgatgatggaatttgtccttctaacttgttataatctaagtcgagttcttgcagttttgtcatcccaccaaacacatctggtatt 11119315  T
Q  132 tgacctctaaatgaattgtatgaaagatccaagcgaatgagatgttgaaggtttgaaagtga 193  Q
     |||| ||||||| |||| | |||| ||||||| |||| || ||||||||||||||||||||    
T  11119316 ggaccgctaaatgcattggaagaaatatccaagtgaataagttgttgaaggtttgaaagtga 11119377  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 259
Target Start/End: Original strand, 11119529 - 11119659
Alignment:
Q  129 atttgacctctaaatgaattgtatgaaagatccaagcgaatgagatgttgaaggtttgaaagtgatgttggcaattctccttcaaaattgttatcactca 228  Q
    |||||| | |||||||||||  ||  |||||||||| ||||||| |||||||||||||||| ||||||||| |   | |||||||  ||||||| |||||    
T  11119529 atttgatcactaaatgaattccatccaagatccaagtgaatgagttgttgaaggtttgaaattgatgttggaaccacaccttcaattttgttatgactca 11119628  T
Q  229 aatctaatacttgaaatttgtttgacgtctg 259  Q
    ||||||||  |||||||||||||||| ||||    
T  11119629 aatctaatttttgaaatttgtttgacatctg 11119659  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 11119385 - 11119445
Alignment:
Q  129 atttgacctctaaatgaattgtatgaaagatccaagcgaatgagatgttgaaggtttgaaa 189  Q
    |||||||| |||||||||||  ||  |||||||||| ||||||| ||||||||||||||||    
T  11119385 atttgaccactaaatgaattccatccaagatccaagtgaatgagttgttgaaggtttgaaa 11119445  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 11119457 - 11119521
Alignment:
Q  129 atttgacctctaaatgaattgtatgaaagatccaagcgaatgagatgttgaaggtttgaaagtga 193  Q
    |||||||| |||||||||||  ||  |||||||||| |||| || |||||||| |||||||||||    
T  11119457 atttgaccactaaatgaattcgatccaagatccaagtgaataagttgttgaagatttgaaagtga 11119521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 253
Target Start/End: Original strand, 8524198 - 8524325
Alignment:
Q  126 gggatttgacctctaaatgaattgtatgaaagatccaagcgaatgagatgttgaaggtttgaaagtgatgttggcaattctccttcaaaattgttatcac 225  Q
    |||| |||||| ||||||||||||||||||| |||||||  |||||||||  |||||||||| ||||||||||| |  || |||||||  ||||||| ||    
T  8524198 gggaattgaccgctaaatgaattgtatgaaacatccaagtaaatgagatgacgaaggtttgatagtgatgttggaagctcaccttcaattttgttattac 8524297  T
Q  226 tcaaatctaatacttgaaatttgtttga 253  Q
    ||||| ||||| ||||||| ||||||||    
T  8524298 tcaaaactaattcttgaaaattgtttga 8524325  T

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