View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21540_high_14 (Length: 250)

Name: NF21540_high_14
Description: NF21540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21540_high_14
NF21540_high_14
[»] chr1 (2 HSPs)
chr1 (1-222)||(49030332-49030552)
chr1 (1-185)||(28446326-28446510)
[»] chr6 (3 HSPs)
chr6 (21-218)||(25403769-25403966)
chr6 (15-187)||(17436334-17436506)
chr6 (31-89)||(25403949-25404007)
[»] chr2 (6 HSPs)
chr2 (1-222)||(943002-943223)
chr2 (21-240)||(24929034-24929241)
chr2 (141-220)||(25678662-25678741)
chr2 (21-88)||(25678729-25678796)
chr2 (1-87)||(24929226-24929312)
chr2 (1-87)||(25678781-25678867)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-206)||(23586-23791)
[»] chr8 (3 HSPs)
chr8 (21-218)||(9387641-9387838)
chr8 (1-127)||(9418686-9418812)
chr8 (1-87)||(9387823-9387909)
[»] chr3 (8 HSPs)
chr3 (1-218)||(13840486-13840703)
chr3 (16-233)||(39685307-39685524)
chr3 (1-181)||(44430517-44430697)
chr3 (52-135)||(3860434-3860517)
chr3 (71-135)||(50664081-50664145)
chr3 (1-82)||(3860364-3860445)
chr3 (46-187)||(53814354-53814495)
chr3 (162-222)||(3860521-3860581)
[»] chr7 (3 HSPs)
chr7 (21-213)||(44552196-44552388)
chr7 (1-87)||(44552125-44552211)
chr7 (138-222)||(41798791-41798875)
[»] scaffold0246 (3 HSPs)
scaffold0246 (71-240)||(2561-2730)
scaffold0246 (1-87)||(2746-2832)
scaffold0246 (21-61)||(2721-2761)
[»] chr4 (7 HSPs)
chr4 (21-87)||(628258-628324)
chr4 (162-222)||(628355-628415)
chr4 (1-87)||(628187-628273)
chr4 (1-87)||(40923787-40923873)
chr4 (21-86)||(40923737-40923802)
chr4 (15-187)||(51719567-51719739)
chr4 (3-61)||(37577159-37577217)
[»] chr5 (1 HSPs)
chr5 (125-185)||(6705843-6705903)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 49030332 - 49030552
Alignment:
Q  1 acttaagacaggtagcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgactctggta 100  Q
    |||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  49030332 acttaagacaggtagcctgacttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttatgtctctggta 49030431  T
Q  101 caaaacatgcaccaaaacctacaatgagtagcgtgggttaagtcacactagttttaacatgagcgtgagttaactcacgctggtgcttctactatgcacg 200  Q
    |||| |||||||||||| || |||||||||||||| |||||||||| ||||||||||||  | |||||||||||||||| |||||||||| |||||||||    
T  49030432 caaagcatgcaccaaaaacttcaatgagtagcgtgagttaagtcacgctagttttaacacta-cgtgagttaactcacgttggtgcttctgctatgcacg 49030530  T
Q  201 ctgcagaccagactggcagtgg 222  Q
    ||||||||||||||||||||||    
T  49030531 ctgcagaccagactggcagtgg 49030552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 28446510 - 28446326
Alignment:
Q  1 acttaagacaggtagcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgactctggta 100  Q
    |||||| ||| || ||||| ||||| ||| |||||| ||||||  |||||||||||||||||  ||| ||||||||  || |||||   | |  |||| |    
T  28446510 acttaacacacgttgcgtgacttaactcacgctagtacaaaatgtaacgcaacttaagtcacactgcgtgacttaaaccatgctagacataaaactggaa 28446411  T
Q  101 caaaacatgcaccaaaacctacaatgagtagcgtgggttaagtcacactagttttaacatgagcgtgagttaactcacgctggtg 185  Q
    |||| || | ||||||||  |   ||||||||||| |||||||||| ||||||||||||  ||||||||||||||| || |||||    
T  28446410 caaagcaagtaccaaaacagaatttgagtagcgtgagttaagtcacgctagttttaacactagcgtgagttaactcgcgttggtg 28446326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 25403966 - 25403769
Alignment:
Q  21 cttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgactctggtacaaaacatgcaccaaaacct 120  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||    
T  25403966 cttaagtcacgctagttcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgtctctggtacaaagcatgcaccaaaaact 25403867  T
Q  121 acaatgagtagcgtgggttaagtcacactagttttaacatgagcgtgagttaactcacgctggtgcttctactatgcacgctgcagaccagactggca 218  Q
     ||||||||| |||| |||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25403866 tcaatgagtaacgtgagttaagtcacgctagttttaacactagcgtgagttaactcacgctggtgcttctactatgcacgctgcagaccagactggca 25403769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 17436506 - 17436334
Alignment:
Q  15 gcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgactctggtacaaaacatgcacca 114  Q
    ||||| ||||| ||| |||||| ||||||  |||||||||||||||||||||  ||||||||  || |||||   | |  |||||||||| || | || |    
T  17436506 gcgtgacttaactcacgctagtacaaaatgtaacgcaacttaagtcacgttgagtgacttaaaccatgctaggcataaaactggtacaaagcaagtacga 17436407  T
Q  115 aaacctacaatgagtagcgtgggttaagtcacactagttttaacatgagcgtgagttaactcacgctggtgct 187  Q
    ||||  |   ||||||||||| |||||||||| ||||||||||||  |||||||||||||||||| |||||||    
T  17436406 aaacaaaatttgagtagcgtgagttaagtcacgctagttttaacactagcgtgagttaactcacgttggtgct 17436334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 25404007 - 25403949
Alignment:
Q  31 gctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttc 89  Q
    |||||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||    
T  25404007 gctagtgcaatatgaaatgcaacttaagtcacgttacttgacttaagtcacgctagttc 25403949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 943223 - 943002
Alignment:
Q  1 acttaagacaggtagcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgactctggta 100  Q
    ||||||||||||||||||| ||||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||    
T  943223 acttaagacaggtagcgtgacttaagtcacgctagtgcaatatgaaacgcaacttaagtcacgttacttgacttaagtcacgctagttctgtctcttgta 943124  T
Q  101 caaaacatgcaccaaaacctacaatgagtagcgtgggttaagtcacactagttttaacatgagcgtgagttaactcacgctggtgcttctactatgcacg 200  Q
    |||| |||||||||||| || |||||||||| ||| |||||||||| |||||||||||| ||||||||||||||||| |||||||||||| |||||||||    
T  943123 caaagcatgcaccaaaaacttcaatgagtagtgtgagttaagtcacgctagttttaacacgagcgtgagttaactcaagctggtgcttctgctatgcacg 943024  T
Q  201 ctgcagaccagactggcagtgg 222  Q
    ||| |||||||||||| |||||    
T  943023 ctgtagaccagactggtagtgg 943002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 24929241 - 24929034
Alignment:
Q  21 cttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgactctggtacaaaacatgcaccaaaacct 120  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||            |||||||||||||||||| ||    
T  24929241 cttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacactagt------------acaaaacatgcaccaaaaact 24929154  T
Q  121 acaatgagtagcgtgggttaagtcacactagttttaacatgagcgtgagttaactcacgctggtgcttctactatgcacgctgcagaccagactggcagt 220  Q
     |||||||||||||| |||||||||| ||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  24929153 tcaatgagtagcgtgagttaagtcacgctagttttaacactagcgtgagttaactcacgctggtgcttctgctatgcacgctgcagaccagacgggcagt 24929054  T
Q  221 gggagtaactgctacctttg 240  Q
    || |||| ||||| ||||||    
T  24929053 ggcagtagctgctgcctttg 24929034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 25678741 - 25678662
Alignment:
Q  141 agtcacactagttttaacatgagcgtgagttaactcacgctggtgcttctactatgcacgctgcagaccagactggcagt 220  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25678741 agtcacgctagttttaacacgagcgtgagttaactcacgctggtgcttctgctatgcacgctgcagaccagactggcagt 25678662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 25678796 - 25678729
Alignment:
Q  21 cttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagtt 88  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25678796 cttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttgagtcacgctagtt 25678729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 24929312 - 24929226
Alignment:
Q  1 acttaagacaggtagcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagt 87  Q
    ||||||||||||||||||| |||||||||  ||||||||| || |||| |||||||||||||||| |||||||||||||||||||||    
T  24929312 acttaagacaggtagcgtgacttaagtcactctagtgcaatatgaaacacaacttaagtcacgttacttgacttaagtcacgctagt 24929226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 25678867 - 25678781
Alignment:
Q  1 acttaagacaggtagcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagt 87  Q
    |||||||||| |||||||| ||||||||| |||||||||| || |||| |||||||||| ||||| |||||||||||||||||||||    
T  25678867 acttaagacatgtagcgtgacttaagtcacgctagtgcaatatgaaacacaacttaagttacgttacttgacttaagtcacgctagt 25678781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 23586 - 23791
Alignment:
Q  1 acttaagacaggtagcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgactctggta 100  Q
    ||||||||||||||||||  ||||||||| ||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  23586 acttaagacaggtagcgtcacttaagtcacgctagtgcaaaattaaatgcaacttaagtcacgttatttgacttaagtcacgctagttctgtctctggta 23685  T
Q  101 caaaacatgcaccaaaacctacaatgagtagcgtgggttaagtcacactagttttaacatgagcgtgagttaactcacgctggtgcttctactatgcacg 200  Q
    |||| |||||||||||| || |||||||||||||| |||||||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||||||    
T  23686 caaagcatgcaccaaaaacttcaatgagtagcgtgagttaagtcacgctagttttaacacgagcttgagttaactcacgctggtgcttctgctatgcacg 23785  T
Q  201 ctgcag 206  Q
    ||||||    
T  23786 ctgcag 23791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 9387838 - 9387641
Alignment:
Q  21 cttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgactctggtacaaaacatgcaccaaaacct 120  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| ||    
T  9387838 cttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgtctgtggtacaaagcatgcaccaaaaact 9387739  T
Q  121 acaatgagtagcgtgggttaagtcacactagttttaacatgagcgtgagttaactcacgctggtgcttctactatgcacgctgcagaccagactggca 218  Q
     |||||||||||||| |||||||||| ||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9387738 tcaatgagtagcgtgagttaagtcacgctagtcttaacactagcatgagttaactcacgctggtgcttctactatgcacgctgtagaccagactggca 9387641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 9418686 - 9418812
Alignment:
Q  1 acttaagacaggtagcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgactctggta 100  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| | ||||||||||||||| ||| |||||||||||||||||| ||||| | |||||||    
T  9418686 acttaagacaggtagcgtgacttaagtcacgctagtgcaaaatgacacgcaacttaagtcatgttacttgacttaagtcacgctggttctaaatctggta 9418785  T
Q  101 caaaacatgcaccaaaacctacaatga 127  Q
    |||| ||||||||||||||||||||||    
T  9418786 caaagcatgcaccaaaacctacaatga 9418812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 9387909 - 9387823
Alignment:
Q  1 acttaagacaggtagcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagt 87  Q
    |||||||||||||||| || ||||||||| |||||||||| || ||| ||||||||||||||||| |||||||||||||||||||||    
T  9387909 acttaagacaggtagcatgacttaagtcacgctagtgcaatatgaaatgcaacttaagtcacgttacttgacttaagtcacgctagt 9387823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 13840703 - 13840486
Alignment:
Q  1 acttaagacaggtagcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgactctggta 100  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  13840703 acttaagacaggtagcgtgacttaagtcacgctagtgcaaaatgaaacgtaacttaaatcacgttacttgacttaagtcacgctagttctgaatctggta 13840604  T
Q  101 caaaacatgcaccaaaacctacaatgagtagcgtgggttaagtcacactagttttaacatgagcgtgagttaactcacgctggtgcttctactatgcacg 200  Q
     ||| ||||||||||||||||||||||| |||||| |||||||||| |||||||||| |  |||| |||||||||||||||| ||||||| |||||||||    
T  13840603 taaagcatgcaccaaaacctacaatgagcagcgtgagttaagtcacgctagttttaagactagcgggagttaactcacgctgatgcttctgctatgcacg 13840504  T
Q  201 ctgcagaccagactggca 218  Q
    ||||||||||||||||||    
T  13840503 ctgcagaccagactggca 13840486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 39685307 - 39685524
Alignment:
Q  16 cgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgactctggtacaaaacatgcaccaa 115  Q
    |||| ||||||||| ||| ||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  39685307 cgtgacttaagtcacgctggtgcaaaatgaaacgaaacttaagtcacgttacttgacttaagtcacgctagttctgaatctggtagaaagcatgcaccaa 39685406  T
Q  116 aacctacaatgagtagcgtgggttaagtcacactagttttaacatgagcgtgagttaactcacgctggtgcttctactatgcacgctgcagaccagactg 215  Q
    ||||||||||||  |||||| |||||||||| ||||||||||||  || ||||||||||| | |||| ||||||| ||| ||||||||||||||||||||    
T  39685407 aacctacaatgaacagcgtgagttaagtcacgctagttttaacactagggtgagttaactaaagctgatgcttctgctacgcacgctgcagaccagactg 39685506  T
Q  216 gcagtgggagtaactgct 233  Q
    ||||||| |||| |||||    
T  39685507 gcagtggcagtagctgct 39685524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 44430517 - 44430697
Alignment:
Q  1 acttaagacaggtagcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgactctggta 100  Q
    ||||||||||||||||| | ||||||||| ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||||    
T  44430517 acttaagacaggtagcgcgacttaagtcacgctagtgcaaaatgaaatgcaacttaagtcacgttacttgacttaagtcacgctagttttgaatctggta 44430616  T
Q  101 caaaacatgcaccaaaacctacaatgagtagcgtgggttaagtcacactagttttaacatgagcgtgagttaactcacgct 181  Q
    |||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||  || ||||||||| |||||||    
T  44430617 caaagcatgcaccaaaacctacaatgagtagcgtgagttaagtcacgctagttttaacactagtgtgagttaagtcacgct 44430697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 3860434 - 3860517
Alignment:
Q  52 acttaagtcacgttgcttgacttaagtcacgctagttctgactctggtacaaaacatgcaccaaaacctacaatgagtagcgtg 135  Q
    |||||||||||||||||||||||||| ||| ||||||||| |||||||||||| |||||||||||| || ||||||||||||||    
T  3860434 acttaagtcacgttgcttgacttaaggcacactagttctgtctctggtacaaagcatgcaccaaaaacttcaatgagtagcgtg 3860517  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 50664145 - 50664081
Alignment:
Q  71 acttaagtcacgctagttctgactctggtacaaaacatgcaccaaaacctacaatgagtagcgtg 135  Q
    |||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  50664145 acttaagtcatgctagttctgactctggtacaaagcatccaccaaaacctacaatgagtagcgtg 50664081  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 3860364 - 3860445
Alignment:
Q  1 acttaagacaggtagcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacg 82  Q
    ||||||| ||||||||||| ||||||||| |||||||||| || ||||| ||||||||||||||| || |||||||||||||    
T  3860364 acttaaggcaggtagcgtgacttaagtcacgctagtgcaatatgaaacgtaacttaagtcacgttactagacttaagtcacg 3860445  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 53814495 - 53814354
Alignment:
Q  46 aacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgactctggtacaaaacatgcaccaaaacctacaatgagtagcgtgggttaagtca 145  Q
    |||||||||||||||||||| | ||||||||  ||||||||| |  |  ||| |||||| || | ||||||||  |   ||||||||||| |||||||||    
T  53814495 aacgcaacttaagtcacgttacgtgacttaaaccacgctagtaccaaaactgatacaaagcaagtaccaaaacagaatttgagtagcgtgagttaagtca 53814396  T
Q  146 cactagttttaacatgagcgtgagttaactcacgctggtgct 187  Q
    | ||||||||||||  | |||||||||||||||| |||||||    
T  53814395 cgctagttttaacactaacgtgagttaactcacgttggtgct 53814354  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 3860521 - 3860581
Alignment:
Q  162 agcgtgagttaactcacgctggtgcttctactatgcacgctgcagaccagactggcagtgg 222  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||| || ||||||    
T  3860521 agcgtgacttaactcacgctggtgcttctgctatgcacgctgcagaccagagtgacagtgg 3860581  T

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Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 44552196 - 44552388
Alignment:
Q  21 cttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgactctggtacaaaacatgcaccaaaacct 120  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||| ||    
T  44552196 cttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcatgctagttctgtctctggtacaaagcatgcaccaaaaact 44552295  T
Q  121 acaatgagtagcgtgggttaagtcacactagttttaacatgagcgtgagttaactcacgctggtgcttctactatgcacgctgcagaccagac 213  Q
     |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  44552296 tcaatgagtggcgtgagttaagtcacactagttttaacacgagcgtgagttaactcacgatggtgcttctgctatgcacgttgcagaccagac 44552388  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 44552125 - 44552211
Alignment:
Q  1 acttaagacaggtagcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagt 87  Q
    ||||||||||||||||||| ||||||||| |||| ||||| || ||||||||||||||||||||| ||| |||||||||||||||||    
T  44552125 acttaagacaggtagcgtgacttaagtcacgctaatgcaatatgaaacgcaacttaagtcacgttacttaacttaagtcacgctagt 44552211  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 41798791 - 41798875
Alignment:
Q  138 ttaagtcacactagttttaacatgagcgtgagttaactcacgctggtgcttctactatgcacgctgcagaccagactggcagtgg 222  Q
    ||||||||| ||||||||||||  |||||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||||    
T  41798791 ttaagtcacgctagttttaacactagcgtgagttaactcaagcttgtgcttctgctatgcacgttgcagaccagactggcagtgg 41798875  T

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Target: scaffold0246 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 2730 - 2561
Alignment:
Q  71 acttaagtcacgctagttctgactctggtacaaaacatgcaccaaaacctacaatgagtagcgtgggttaagtcacactagttttaacatgagcgtgagt 170  Q
    |||||||||| |||||||||| |||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  2730 acttaagtcaagctagttctgcctctggtacaaagcatgcaccaaaaacttcaatgagtagcgtgagttaagtcacactagttttaacacgagcgtgagt 2631  T
Q  171 taactcacgctggtgcttctactatgcacgctgcagaccagactggcagtgggagtaactgctacctttg 240  Q
    ||||||| |||||||||||| ||||||| ||||||||||||||||||||||| |||| ||||| ||||||    
T  2630 taactcatgctggtgcttctgctatgcatgctgcagaccagactggcagtggcagtagctgctgcctttg 2561  T

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Target: scaffold0246; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 2832 - 2746
Alignment:
Q  1 acttaagacaggtagcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagt 87  Q
    |||||||||||||||| || ||||||||| |||||||||| |  |||||||||||||| |||||| |||||||||||||||||||||    
T  2832 acttaagacaggtagcatgacttaagtcacgctagtgcaataagaaacgcaacttaagccacgttacttgacttaagtcacgctagt 2746  T

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Target: scaffold0246; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 2761 - 2721
Alignment:
Q  21 cttaagtcatgctagtgcaaaattaaacgcaacttaagtca 61  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  2761 cttaagtcacgctagtgcaaaattaaacgcaacttaagtca 2721  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 628258 - 628324
Alignment:
Q  21 cttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagt 87  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  628258 cttaagtcacgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacactagt 628324  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 628355 - 628415
Alignment:
Q  162 agcgtgagttaactcacgctggtgcttctactatgcacgctgcagaccagactggcagtgg 222  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  628355 agcgtgagttaactcacgctggtgcttctgctatgcacgctgcagaccagactggcagtgg 628415  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 628187 - 628273
Alignment:
Q  1 acttaagacaggtagcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagt 87  Q
    ||||||||||||||| ||| ||||||| | |||||||||| || |||| |||||||||||||||| |||||||||||||||||||||    
T  628187 acttaagacaggtagagtgacttaagtaacgctagtgcaatatgaaacacaacttaagtcacgttacttgacttaagtcacgctagt 628273  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 40923873 - 40923787
Alignment:
Q  1 acttaagacaggtagcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagt 87  Q
    ||||||||||||||||||| ||||||||| |||||||||| || |||  |||||||||||||||| |||||||||| ||||||||||    
T  40923873 acttaagacaggtagcgtgacttaagtcacgctagtgcaatatgaaatacaacttaagtcacgttacttgacttaaatcacgctagt 40923787  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 40923802 - 40923737
Alignment:
Q  21 cttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctag 86  Q
    ||||| ||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  40923802 cttaaatcacgctagtgcaaaatttaacgcaatttaagtcacgttgcttgacttaagtcacgctag 40923737  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 51719739 - 51719567
Alignment:
Q  15 gcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtcacgttgcttgacttaagtcacgctagttctgactctggtacaaaacatgcacca 114  Q
    ||||| ||||| ||| | |||| ||||||  |||||||||||||||||||||| ||||||||  ||||||||   | |  |||||||||| || ||||||    
T  51719739 gcgtgacttaactcacgttagtacaaaatgtaacgcaacttaagtcacgttgcgtgacttaaaccacgctaggcataaaactggtacaaagcaagcacca 51719640  T
Q  115 aaacctacaatgagtagcgtgggttaagtcacactagttttaacatgagcgtgagttaactcacgctggtgct 187  Q
    ||||  |   | | ||||||| |||||||||||| ||||||||||  ||| |||||||||||||  |||||||    
T  51719639 aaacagaatttaactagcgtgagttaagtcacaccagttttaacactagcatgagttaactcacattggtgct 51719567  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 37577217 - 37577159
Alignment:
Q  3 ttaagacaggtagcgtgtcttaagtcatgctagtgcaaaattaaacgcaacttaagtca 61  Q
    |||||||||||||| || |||||||||| ||| |||||||| |||||||||||||||||    
T  37577217 ttaagacaggtagcatgacttaagtcatactaatgcaaaatgaaacgcaacttaagtca 37577159  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 6705903 - 6705843
Alignment:
Q  125 tgagtagcgtgggttaagtcacactagttttaacatgagcgtgagttaactcacgctggtg 185  Q
    ||||||||||| |||||||||| ||||||||||||  |||||||||||||||||| |||||    
T  6705903 tgagtagcgtgagttaagtcacgctagttttaacactagcgtgagttaactcacgttggtg 6705843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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