View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21540_high_22 (Length: 234)
Name: NF21540_high_22
Description: NF21540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21540_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 40195347 - 40195530
Alignment:
| Q |
38 |
aaattggtgactat--gtaacatcttgttttgctatatcttgtaggtgatttttcatgcacatttgaagttcaaagtgtaattcctattttgaagaatgt |
135 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40195347 |
aaattggtgactatatgtaacatcttgttttgttatatcttgtaggtgatttttcatgcacatttgaagttcaaagtgtaattcctattttgaagaatgt |
40195446 |
T |
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| Q |
136 |
atatggtgaaaatatgaaaaatatcttgcatgttggccctgagagttgttcagtggtatccaaattgttaaaaagggaagttga |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40195447 |
atatggtgaaaatatgaaaaatatcttgcatgttggccctgagagttgttcagtggtatccaaattgttaaaaggggaagttga |
40195530 |
T |
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