View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21540_high_9 (Length: 300)
Name: NF21540_high_9
Description: NF21540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21540_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 44226601 - 44226877
Alignment:
| Q |
8 |
cgaagaaaatatgttgggtggagagcagaattcatttattaatagtactagtactatacatgtacatgggttcctcacatcctttaaaagcattggcaaa |
107 |
Q |
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|||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44226601 |
cgaacaaaatgtgctgggtggagagcagaattcatttattaatagtactagtactatacatgtacatgggttcctcacatcctttaaaagcattggcaaa |
44226700 |
T |
|
| Q |
108 |
accaacaaacacaccccacttacacttagacaagctttcttcgtcccttattttccactccactaagctagctacttaccaaccaaacttcatttcaaat |
207 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44226701 |
accaacaaacacaccccacttacacttagacaagctttcttcgtcccttattttccactccactaagctagctacttaccaaccaaacttcatttcaaat |
44226800 |
T |
|
| Q |
208 |
ggctgcagccaaaccagctgctgatcaacaagttcctcccggattagaaacactcaagtatcaggtaatcataatta |
284 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44226801 |
ggctgcagacaaaccagctgctgatcaacaagttcctcccggattagaaacactcaagtatcaggtaatcataatta |
44226877 |
T |
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