View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21540_low_1 (Length: 1053)
Name: NF21540_low_1
Description: NF21540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21540_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 662; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 18 - 781
Target Start/End: Complemental strand, 10994003 - 10993235
Alignment:
| Q |
18 |
tttttgtcaccatcgtaagagatcaactagtgtcatttcatcttgtaaaatgatttatgattcagattttagtgtattaattaggctggattaatcagtt |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10994003 |
tttttgtcaccattgtaagagatcaactagtgtcatttcatcttgtaaaatgatttatgattcagattttagtgtattaattaggttggattaatcagtt |
10993904 |
T |
|
| Q |
118 |
taatgataaacaaacaaaaagaaagctgtggtgtactgtacttaccagcactggaatctagatagaaattttatcagactgtatcaatatgattcgatat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10993903 |
taatgataaacaaacaaaaagaaagctgtggtgtattgtacttaccagcactggaatctagatagaaattttatcagactgtatcaatatg-ttcgatag |
10993805 |
T |
|
| Q |
218 |
atatggttgtatctcttgatcaagaagacctcttccatttcagttgatttttgttttctcagaaggaaagctcatat-----gtgtatctagagcttttg |
312 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
10993804 |
atatggttgtatttcttgatcaagaagacctcttccatttcagttgatttttgttttctcagaaggaaagct-atatttagagtgtatctagagcttttg |
10993706 |
T |
|
| Q |
313 |
attcatatattatgactgcttcatagaaacagagtaatcctttgcacactaggtggtgcaactttggactatatattaaatctatgataaatgggtaaaa |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10993705 |
attcatatattatgactgcttcatagaaacagaataatcctttgcacactaggtggtgcaactttggactatatattaaatctatgataaatgggtaaat |
10993606 |
T |
|
| Q |
413 |
gcactgccattttcggcaagccaatcattaggttaatataaaaagtcaaaatccctatgctcgttctgatattctttctgcaagcaagactgccatatgt |
512 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10993605 |
gcactgccatttttggcaagccaatcattaggttaatataaaaagtcaaaatccctatgctcgttctgatattcttgctgcaagcaagactgccatatgt |
10993506 |
T |
|
| Q |
513 |
tttatttggtttaagtttatgtgaagtatttatgtct---taatgtaatatgaatttttcttaccaagagaaacttgaacaccacccaaacagaggatga |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10993505 |
tttatttggtttaagtttatgtgaagtatttatgtcttactaatgtaatatgaatttttcttactaagagaaacttgaacaccacccaaacagaggatga |
10993406 |
T |
|
| Q |
610 |
gacattagatgtttttataatgttgcttgggatcaattctgggacatactcttcaccgtgaactcgaagtttgaaaactctcgaccctgctgacctcttt |
709 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10993405 |
gacattagatgtttttataatgttgcttgggat-aactctgggacatactcttcaccgtgaactcgaagtttgaaaactctcaaccctgctgacctcttt |
10993307 |
T |
|
| Q |
710 |
tgcgtgattgtgaaagccaagagaaagatatatatcaatattcactatctgagttgtagaaattcaaattct |
781 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10993306 |
tgcgtaattgtgaaagccaagagaaagatatatatcaatattcactatctgagttgtagaaattcaaattct |
10993235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 647 - 1053
Target Start/End: Complemental strand, 10993235 - 10992821
Alignment:
| Q |
647 |
tctgggacatactcttcaccgtgaactcgaagtttgaaaactctcgaccctgctgacctcttttgcgtgattgtgaaagccaagagaaagatatatatca |
746 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10993235 |
tctgggacatactcttcaccgtgaactcgaagtttgaaaactctcaaccctgctgacctctttttcgtaattgtgaaagccaagagaaagatatatatca |
10993136 |
T |
|
| Q |
747 |
atattcactatctgagttgtagaaattcaaattcttgctttcaatttgaatgggtcgtttgtacatgtagactgtcctgtatgctgtttcgtgttggcat |
846 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10993135 |
atattcactatctgagttgtagaaattcaaattcttgctgtcaatttgaatgggttgtttgtacatgtagactgtcctgtatgctgtttcgtgttggcat |
10993036 |
T |
|
| Q |
847 |
acatatat--------tatgtaagtcatcaaatgcgcgtgtggctgcactagcggctgcaccattctcaaatctcgagtattattttaatgcatgaatca |
938 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10993035 |
acatatatatatatattatgtaagtcatcaaatgcgcgtgtggctgcactagcggctgcactattctcaaatcttgagtattattttaatgcatgaatca |
10992936 |
T |
|
| Q |
939 |
catcatacctgagtttcttcctccgcttctctttatctttaacttgacaaccttcgttagttcaaacaatgagaaacttgctctggtgttgcactcattt |
1038 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10992935 |
catcatacctgagtttcttcctccgcttctctttatctttaacttgacaaccttcgttagttcaaacaatgagaaacttgctctggtgttgcactcattt |
10992836 |
T |
|
| Q |
1039 |
tcttcctttgttcct |
1053 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10992835 |
tcttcctttgttcct |
10992821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University