View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21540_low_11 (Length: 288)
Name: NF21540_low_11
Description: NF21540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21540_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 42891505 - 42891769
Alignment:
| Q |
11 |
aatgagatcttggaatctgatgacaagtatggatttattgtcatggatggtaatggcacactatttgggaccttgagtggtaatacaagggaggtgcttc |
110 |
Q |
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| T |
42891505 |
aatgagatcctggaatctgatgacaagtatggatttattgtcatggatggtaatggcacactatttgggaccttgagtggtaatacaagggaggtgcttc |
42891604 |
T |
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| Q |
111 |
acaagtataccgtggatcttccnnnnnnncatggaagaggagggcaatcagccctacattttgcccgtcttcgcacagagaagcgtcataactacgtgag |
210 |
Q |
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| T |
42891605 |
acaagtataccgtggatcttccaaaaaaacatggaagaggagggcaatcagccctacgttttgcccgtcttcgcacagagaagcgtcataactacgtgag |
42891704 |
T |
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| Q |
211 |
gaagactgctgagcttgcaacccagttttatatcaatcctgctaccagccagcctaatgtttctg |
275 |
Q |
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| T |
42891705 |
gaagactgccgagcttgcaacccagttttatatcaatcctgctaccagccagcctaatgtttctg |
42891769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 22 - 275
Target Start/End: Original strand, 42896361 - 42896614
Alignment:
| Q |
22 |
ggaatctgatgacaagtatggatttattgtcatggatggtaatggcacactatttgggaccttgagtggtaatacaagggaggtgcttcacaagtatacc |
121 |
Q |
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| T |
42896361 |
ggaatctgaagccaagtttggatttattgtcatggattacaatggcgctgtgtttgggaccttgagtggcaatacaagagaagtgcttcacaagttcgtt |
42896460 |
T |
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| Q |
122 |
gtggatcttccnnnnnnncatggaagaggagggcaatcagccctacattttgcccgtcttcgcacagagaagcgtcataactacgtgaggaagactgctg |
221 |
Q |
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| T |
42896461 |
gtatatcttccaaagaaatatggaagaggaggggtaccagtcctacggttttcccgtgttcgtatggagaaacgtcataactatgtgaagaagactgttg |
42896560 |
T |
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| Q |
222 |
agcttgcaacccagttttatatcaatcctgctaccagccagcctaatgtttctg |
275 |
Q |
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| T |
42896561 |
accttgcaacacagttctatatcaatcctgctaccagccagcctaatgtttctg |
42896614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 28920820 - 28921081
Alignment:
| Q |
9 |
tcaatgagatcttggaatctgatgacaagtatggatttattgtcatggatggtaatggcacactatttgggaccttgagtggtaatacaagggaggtgct |
108 |
Q |
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| T |
28920820 |
tcaatgagctattggaatctgatgacaagtttggatttattgtcatggacggtaatggcacattgttcgggaccttgagtggtaatacaagagaggtgct |
28920919 |
T |
|
| Q |
109 |
tcacaagtataccgtggatcttccnnnnnnncatggaagaggagggcaatcagccctacattttgcccgtcttcgcacagagaagcgtcataactacgtg |
208 |
Q |
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| T |
28920920 |
tcacaagttcagtgtcgatcttccaaagaaacatggaagaggagggcaatctgccctgcgttttgctcgtcttcgcatggagaagcgtcataactacgtg |
28921019 |
T |
|
| Q |
209 |
aggaagactgctgagcttgcaacccagttttatatcaatcctgctaccagccagcctaatgt |
270 |
Q |
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| T |
28921020 |
aggaagactgctgagcttgcaacccagttttatatcaatcctgctaccagccagcctaatgt |
28921081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 176 - 275
Target Start/End: Original strand, 28907819 - 28907918
Alignment:
| Q |
176 |
cgtcttcgcacagagaagcgtcataactacgtgaggaagactgctgagcttgcaacccagttttatatcaatcctgctaccagccagcctaatgtttctg |
275 |
Q |
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| T |
28907819 |
cgtcttcgcacagagaagcatcataactatgtgaggaagactgctgagcttgcaatccagttttatatcaatcctgctaccagccagcctaatgtttctg |
28907918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 28897882 - 28897979
Alignment:
| Q |
21 |
tggaatctgatgacaagtatggatttattgtcatggatggtaatggcacactatttgggaccttgagtggtaatacaagggaggtgcttcacaagtat |
118 |
Q |
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| T |
28897882 |
tggaatctgatgacatgtttggatttatcgtcatggatggtgaaggcactctatttgggaccttgagtggtaatacaagacaggtgctttacatgtat |
28897979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 271
Target Start/End: Complemental strand, 32764232 - 32763984
Alignment:
| Q |
23 |
gaatctgatgacaagtatggatttattgtcatggatggtaatggcacactatttgggaccttgagtggtaatacaagggaggtgcttcacaagtataccg |
122 |
Q |
| |
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|||||||||||||||| ||| |||||||| |||||||| ||||| || || || ||||| || ||||| ||||| | ||||||||||| || | ||| | |
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| T |
32764232 |
gaatctgatgacaagtttggttttattgttatggatggaaatggaacccttttcgggacattaagtggaaatactcgtgaggtgcttcataaatttactg |
32764133 |
T |
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| Q |
123 |
tggatcttccnnnnnnncatggaagaggagggcaatcagccctacattttgcccgtcttcgcacagagaagcgtcataactacgtgaggaagactgctga |
222 |
Q |
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| ||||| || ||||| |||||||| || ||||| | | |||||| |||||||| | || || || || || ||||| ||||||||||| || |
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| T |
32764132 |
ttgatctaccaaagaaacatggtagaggaggacagtcagctttgcgttttgctcgtcttcggatggaaaaacgacacaattacgtcaggaagactgcaga |
32764033 |
T |
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| Q |
223 |
gcttgcaacccagttttatatcaatcctgctaccagccagcctaatgtt |
271 |
Q |
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||||| || |||||||| ||||| ||||||||||| |||||||||||| |
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| T |
32764032 |
acttgccactcagttttacatcaaccctgctaccagtcagcctaatgtt |
32763984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 44878252 - 44878203
Alignment:
| Q |
82 |
cttgagtggtaatacaagggaggtgcttcacaagtataccgtggatcttc |
131 |
Q |
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| T |
44878252 |
cttgagtggtaatacaagagatgtgcctcacaagtatagtgtggatcttc |
44878203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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