View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21540_low_12 (Length: 285)

Name: NF21540_low_12
Description: NF21540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21540_low_12
NF21540_low_12
[»] chr7 (21 HSPs)
chr7 (1-255)||(22898346-22898600)
chr7 (1-235)||(22876019-22876253)
chr7 (1-234)||(22815131-22815364)
chr7 (1-255)||(22840135-22840389)
chr7 (1-241)||(22894041-22894281)
chr7 (1-234)||(22805413-22805646)
chr7 (1-255)||(22809727-22809981)
chr7 (1-234)||(22889396-22889629)
chr7 (1-234)||(22831135-22831368)
chr7 (1-234)||(22885698-22885927)
chr7 (2-226)||(22842264-22842500)
chr7 (1-228)||(22880674-22880901)
chr7 (47-243)||(22913763-22913959)
chr7 (1-80)||(22858677-22858756)
chr7 (135-241)||(22858559-22858665)
chr7 (251-285)||(22898281-22898315)
chr7 (251-285)||(22809662-22809696)
chr7 (251-285)||(22831049-22831083)
chr7 (251-285)||(22840070-22840104)
chr7 (251-285)||(22885612-22885646)
chr7 (251-285)||(22893962-22893996)
[»] chr1 (2 HSPs)
chr1 (1-234)||(21150377-21150610)
chr1 (252-285)||(21150662-21150695)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 22898600 - 22898346
Alignment:
Q  1 ctatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataagacctcaatatccaactctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22898600 ctatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataagacctcaatatccaactctt 22898501  T
Q  101 agtggccatggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22898500 agtggccatggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaa 22898401  T
Q  201 atagtagcaaccatgtttttggtgttgaacttgatactattattagtagtgagtt 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22898400 atagtagcaaccatgtttttggtgttgaacttgatactattattagtagtgagtt 22898346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 22876253 - 22876019
Alignment:
Q  1 ctatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataagacctcaatatccaactctt 100  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  22876253 ctatccaaatcctatagttttcaaaaacacttccaatggaagtgtgtcttctttctcaactacttttgtatttgccataagacctcaatatccaactatt 22876154  T
Q  101 agtggccatggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaa 200  Q
    |||||  ||||||||||||||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| || ||||||||||    
T  22876153 agtggtgatggaattgtttttgttgtttctcctacaaaagggctaccaaactcactaccacgtcaataccttggtctctttaacaattcaaacaatggaa 22876054  T
Q  201 atagtagcaaccatgtttttggtgttgaacttgat 235  Q
    | |||||||||||||||||||||||||||||||||    
T  22876053 acagtagcaaccatgtttttggtgttgaacttgat 22876019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 22815364 - 22815131
Alignment:
Q  1 ctatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataagacctcaatatccaactctt 100  Q
    |||||||||||||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| || ||    
T  22815364 ctatccaaatcctatagttttcaaaaacacttccaatgaaagtgtgtcttctttctcaactacttttgtgtttgcaataagacctcaatatccacctttt 22815265  T
Q  101 agtggccatggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaa 200  Q
    |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||    
T  22815264 agtggccaaggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaagtcaataccttggtctctttaacgattccaacaatggaa 22815165  T
Q  201 atagtagcaaccatgtttttggtgttgaacttga 234  Q
    | |||| ||||||||||||||||||||| |||||    
T  22815164 acagtaacaaccatgtttttggtgttgagcttga 22815131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 22840389 - 22840135
Alignment:
Q  1 ctatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataagacctcaatatccaactctt 100  Q
    |||||||||||||||||||||||| |||||||| |  |||||||||||||||||||||||||||||||| ||| |||||| | ||  |||||||||||||    
T  22840389 ctatccaaatcctatagttttcaaaaacacttccagcggaagtgtttcttctttctcaactacttttgtattttccataaaatcttcatatccaactctt 22840290  T
Q  101 agtggccatggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaa 200  Q
    |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  22840289 agtggccatggaattgttttcgttatttctcctacaaaagggctaccaaattcactaccaagtcaataccttggtctctttaaccaatccaacattggaa 22840190  T
Q  201 atagtagcaaccatgtttttggtgttgaacttgatactattattagtagtgagtt 255  Q
    |  || |||||||||||||||||||||||||||||||| || | |||||||||||    
T  22840189 acggtggcaaccatgtttttggtgttgaacttgatactcttctaagtagtgagtt 22840135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 22894281 - 22894041
Alignment:
Q  1 ctatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataagacctcaatatccaactctt 100  Q
    ||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||  |||||||  |    
T  22894281 ctatccaaaccctatagttttgaagaacacttccaatggaagtgtttcttcattctcaactacttttgtatttgccataagacatcaaggtccaacttat 22894182  T
Q  101 agtggccatggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaa 200  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||| ||  |||||||||||||||| || | |||||||||||||    
T  22894181 agtggccatggaattgtttttgttctttctcctacaaaagggctaccaaattcactccaaggttcataccttggtctctttgacgattccaacaatggaa 22894082  T
Q  201 atagtagcaaccatgtttttggtgttgaacttgatactatt 241  Q
    ||  ||||||||| |||||||||||||||||||||||||||    
T  22894081 atcctagcaaccacgtttttggtgttgaacttgatactatt 22894041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 22805646 - 22805413
Alignment:
Q  1 ctatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataagacctcaatatccaactctt 100  Q
    |||||||||||| ||||||||||| |||||||| | || |||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| || ||    
T  22805646 ctatccaaatccaatagttttcaaaaacacttccagtgaaagtgtgtcttctttctcaactacttttgtatttgccataatacctcaatatccacctttt 22805547  T
Q  101 agtggccatggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaa 200  Q
    | |||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| || |||||||||||||||||||||  | |||||||||||||    
T  22805546 actggccatggaattgtttttgttctttctccaacaaaagggctaccaaattcactaccaaatcaataccttggtctctttaatgattccaacaatggaa 22805447  T
Q  201 atagtagcaaccatgtttttggtgttgaacttga 234  Q
    | ||| ||||||||||||||||||||||||||||    
T  22805446 acagtggcaaccatgtttttggtgttgaacttga 22805413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 22809981 - 22809727
Alignment:
Q  1 ctatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataagacctcaatatccaactctt 100  Q
    ||||||||||||| |||||||||| ||||||   | || |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22809981 ctatccaaatcctgtagttttcaaaaacactatcagtgaaagtgtatcttctttctcaactacttttgtatttgccataagacctcaatatccaactctt 22809882  T
Q  101 agtggccatggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaa 200  Q
    |||  |||||||||||| |||||||| || |||||||||||||| |||||||||  |  ||||||||| ||||||||||||||| |||||||||||||||    
T  22809881 agttcccatggaattgtatttgttgtttcacctacaaaagggctgccaaattcaaaagcaagtcaatatcttggtctctttaaccaatccaacaatggaa 22809782  T
Q  201 atagtagcaaccatgtttttggtgttgaacttgatactattattagtagtgagtt 255  Q
    | ||||| ||||||||||| ||||||||||| |||||| || | |||||||||||    
T  22809781 acagtagtaaccatgttttcggtgttgaactagatactcttctaagtagtgagtt 22809727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 22889629 - 22889396
Alignment:
Q  1 ctatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataagacctcaatatccaactctt 100  Q
    |||||||||||| ||||||||||| |||||||| | || ||| || ||||||||||||||||||||| | |||||||||| |||||||||| ||| | ||    
T  22889629 ctatccaaatccaatagttttcaaaaacacttccagtgaaagcgtgtcttctttctcaactacttttttatttgccataatacctcaatatgcaaatatt 22889530  T
Q  101 agtggccatggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaa 200  Q
     ||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| | ||||||| |||||    
T  22889529 ggtggccatggaattgtttttgttatttctccaacaaaagggctaccagattcactaccaagtcaataccttggtctctttaacgattccaacagtggaa 22889430  T
Q  201 atagtagcaaccatgtttttggtgttgaacttga 234  Q
    | |||||||||||||||||||||||||| |||||    
T  22889429 acagtagcaaccatgtttttggtgttgagcttga 22889396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 22831368 - 22831135
Alignment:
Q  1 ctatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataagacctcaatatccaactctt 100  Q
    ||||||||||| ||||||||| || |||||||| |||| |||||| || |||||||||||||||||||| ||| |||||| | |    |||||| || ||    
T  22831368 ctatccaaatcatatagtttttaaaaacacttcgaatgcaagtgtgtcatctttctcaactacttttgtatttaccataaaatccatgtatccatctatt 22831269  T
Q  101 agtggccatggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaa 200  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| | ||||||| |||||    
T  22831268 agtggccatggaattgtttttgttctttctcctacaaaagggctaccaaattcactaccaaatcaatactttggtctctttaactactccaacattggaa 22831169  T
Q  201 atagtagcaaccatgtttttggtgttgaacttga 234  Q
    | |||||||||||||||||||||||||| |||||    
T  22831168 acagtagcaaccatgtttttggtgttgagcttga 22831135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 22885927 - 22885698
Alignment:
Q  1 ctatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataagacctcaatatccaactctt 100  Q
    |||||||||||||||||||||||| ||||||   | || |||||| |||||||||||||||| || | | ||||| |||| | || |||||||||||| |    
T  22885927 ctatccaaatcctatagttttcaaaaacactc--agtgaaagtgtgtcttctttctcaactaattctttatttgctataaaatcttaatatccaactcat 22885830  T
Q  101 agtggccatggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaa 200  Q
    |||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||  | ||||||||||||||  |||||| |||||||||||||    
T  22885829 agtggccatggaattgtttttgttatttcacctacaaaagggctaccaaattcactacaatattaataccttggtctc--taacaattccaacaatggaa 22885732  T
Q  201 atagtagcaaccatgtttttggtgttgaacttga 234  Q
    | ||||||| ||||||||||||| |||| |||||    
T  22885731 acagtagcagccatgtttttggtattgagcttga 22885698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 22842500 - 22842264
Alignment:
Q  2 tatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataagacctcaatatcca------a 95  Q
    |||||||| || ||||||||||| |||||||||| || |||||| ||||||||||||||||||||| | |||||||||| | ||| | |||||      |    
T  22842500 tatccaaaaccaatagttttcaaaaacacttctagtgaaagtgtgtcttctttctcaactacttttttatttgccataaaatctccagatccagaactaa 22842401  T
Q  96 ctcttagtggccatggaattgtttt--tgttg----tctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatc 189  Q
    ||||||||||||| || ||||||||  ||||     | || ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||    
T  22842400 ctcttagtggccacgggattgttttgttgtttcaactttcacctacaaaagggcaaccaaattcactaccaggtcaataccttggtctctttaacaattc 22842301  T
Q  190 caacaatggaaatagtagcaaccatgtttttggtgtt 226  Q
    |||||||||||||||||||||||||||||||||||||    
T  22842300 caacaatggaaatagtagcaaccatgtttttggtgtt 22842264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 22880901 - 22880674
Alignment:
Q  1 ctatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataagacctcaatatccaactctt 100  Q
    |||||||||||||||||||||||| |||||||| |||| |||||| | ||||||||||||||||||||| |||||||| | | ||   ||| || ||  |    
T  22880901 ctatccaaatcctatagttttcaaaaacacttccaatgaaagtgtgtattctttctcaactacttttgtatttgccatcaaatctaggtatacagctact 22880802  T
Q  101 agtggccatggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaa 200  Q
     ||||||||||| ||||||||||||| || || |||||||||||||||||||| |||| |||| ||||||||||||||||| |||  | ||||| |||||    
T  22880801 tgtggccatggacttgtttttgttgtttcaccaacaaaagggctaccaaattcgctaccaagtaaataccttggtctctttgacactttcaacactggaa 22880702  T
Q  201 atagtagcaaccatgtttttggtgttga 228  Q
    | | ||||||||||||||||| ||||||    
T  22880701 acattagcaaccatgtttttgctgttga 22880674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 47 - 243
Target Start/End: Complemental strand, 22913959 - 22913763
Alignment:
Q  47 tcttctttctcaactacttttgtgtttgccataagacctcaatatccaactcttagtggccatggaattgtttttgttgtctctcctacaaaagggctac 146  Q
    ||||||||||| ||||||||||| |||||||||| | || | | ||| | |||||||||||||||||||||||||||| | ||||| ||||||||| |||    
T  22913959 tcttctttctctactacttttgtttttgccataaaatctgagtttcctaatcttagtggccatggaattgtttttgttctttctccaacaaaagggttac 22913860  T
Q  147 caaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaaatagtagcaaccatgtttttggtgttgaacttgatactattat 243  Q
    |||||||||||| |||||||||||||||||| || ||  |||| ||||||||||| |  |  ||||||||||||||| | || ||||||||||||||    
T  22913859 caaattcactaccaagtcaataccttggtctattcaatgaatcaaacaatggaaacaacaataaccatgtttttggtttggagcttgatactattat 22913763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 22858756 - 22858677
Alignment:
Q  1 ctatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataa 80  Q
    |||||||||||||||||||||||| |||||||||| || || ||| ||||||||||||||||||||| | ||||||||||    
T  22858756 ctatccaaatcctatagttttcaaaaacacttctagtgaaactgtgtcttctttctcaactacttttttatttgccataa 22858677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 22858665 - 22858559
Alignment:
Q  135 caaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaaatagtagcaaccatgtttttggtgttgaacttga 234  Q
    |||||||||||||| ||||||| | ||  ||||||||||||| ||||||| | ||||||| |||||| | |||||||||||| |||| |||||| |||||    
T  22858665 caaaagggctaccagattcacttccaaaccaataccttggtccctttaacgattccaacattggaaacactagcaaccatgtgtttgctgttgagcttga 22858566  T
Q  235 tactatt 241  Q
     ||||||    
T  22858565 cactatt 22858559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 22898281 - 22898315
Alignment:
Q  251 gagttgatttagctgatttcaaatcattgatatca 285  Q
    |||||||||||||||||||||||||||||||||||    
T  22898281 gagttgatttagctgatttcaaatcattgatatca 22898315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 22809662 - 22809696
Alignment:
Q  251 gagttgatttagctgatttcaaatcattgatatca 285  Q
    ||||||| |||||||||||||||||||||||||||    
T  22809662 gagttgaattagctgatttcaaatcattgatatca 22809696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 22831049 - 22831083
Alignment:
Q  251 gagttgatttagctgatttcaaatcattgatatca 285  Q
    ||||||| |||||||||||||||||||||||||||    
T  22831049 gagttgaattagctgatttcaaatcattgatatca 22831083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 22840070 - 22840104
Alignment:
Q  251 gagttgatttagctgatttcaaatcattgatatca 285  Q
    ||||||| |||||||||||||||||||||||||||    
T  22840070 gagttgaattagctgatttcaaatcattgatatca 22840104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 22885612 - 22885646
Alignment:
Q  251 gagttgatttagctgatttcaaatcattgatatca 285  Q
    ||||||| |||||||||||||||||||||||||||    
T  22885612 gagttgaattagctgatttcaaatcattgatatca 22885646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 22893962 - 22893996
Alignment:
Q  251 gagttgatttagctgatttcaaatcattgatatca 285  Q
    ||||||| |||||||||||||||||||||||||||    
T  22893962 gagttgaattagctgatttcaaatcattgatatca 22893996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 21150377 - 21150610
Alignment:
Q  1 ctatccaaatcctatagttttcaagaacacttctaatggaagtgtttcttctttctcaactacttttgtgtttgccataagacctcaatatccaactctt 100  Q
    |||||||||||||||||||||| | ||||||||    | |||||| | |||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  21150377 ctatccaaatcctatagttttcgaaaacacttccggcgaaagtgtgttttctttttcaactacttttgtatttgccataagacctcaatatccaactctt 21150476  T
Q  101 agtggccatggaattgtttttgttgtctctcctacaaaagggctaccaaattcactacaaagtcaataccttggtctctttaacaaatccaacaatggaa 200  Q
     ||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||||    
T  21150477 ggtggccatggaattgtttttgttatttctcctacaaaagagctaccaaattcactaccaacacaataccttggtctctttaacaattccaacaatggaa 21150576  T
Q  201 atagtagcaaccatgtttttggtgttgaacttga 234  Q
    | |||||||||||||||||||||||||| |||||    
T  21150577 acagtagcaaccatgtttttggtgttgagcttga 21150610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 285
Target Start/End: Complemental strand, 21150695 - 21150662
Alignment:
Q  252 agttgatttagctgatttcaaatcattgatatca 285  Q
    |||||| |||||||||||||||||||||||||||    
T  21150695 agttgagttagctgatttcaaatcattgatatca 21150662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University