View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21540_low_16 (Length: 241)
Name: NF21540_low_16
Description: NF21540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21540_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 12959173 - 12959018
Alignment:
| Q |
68 |
gttggacatttttactgtctcctttaatattactataatatgtaaattgggttgaacgaaattaagaataatatttatgaggtaacgctttgaaaagaac |
167 |
Q |
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| T |
12959173 |
gttggacatttttactgtctcctttaatattactataatatgtaaattgggttgaacgaaattaaggataatattaatgaggtaacgctttgaaaagaac |
12959074 |
T |
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| Q |
168 |
agaaggactaatttagaatcaattatacaaaaacataatataaacacacataattt |
223 |
Q |
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| T |
12959073 |
agaaggactgattcagaatcaattatacaaaaacataatataaacacacataattt |
12959018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 37868513 - 37868358
Alignment:
| Q |
68 |
gttggacatttttactgtctcctttaatattactataatatgtaaattgggttgaacgaaattaagaataatatttatgaggtaacgctttgaaaagaac |
167 |
Q |
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| T |
37868513 |
gttggacatttttactgtctcctttaatattactataatatgtaaattgggttgaacgaaattaaggataatattaatgaggtaacgctttgaaaagaac |
37868414 |
T |
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| Q |
168 |
agaaggactaatttagaatcaattatacaaaaacataatataaacacacataattt |
223 |
Q |
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| T |
37868413 |
agaaggaatgattcataatcaattatacaaaaacataatataaacacacataattt |
37868358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 10367804 - 10367892
Alignment:
| Q |
135 |
ataatatttatgaggtaacgctttgaaaagaacagaaggactaatttagaatcaattatacaaaaacataatataaacacacataattt |
223 |
Q |
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| T |
10367804 |
ataatattaatgaggtaacgctttgaaaagaacagaaggactgattcaaaatcaattatacaaaaacataatataaacacacataattt |
10367892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 68 - 223
Target Start/End: Original strand, 29738997 - 29739152
Alignment:
| Q |
68 |
gttggacatttttactgtctcctttaatattactataatatgtaaattgggttgaacgaaattaagaataatatttatgaggtaacgctttgaaaagaac |
167 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||| |
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| T |
29738997 |
gttggacatttttaccgtctcctttaatattaccataatatataaattgggttgaacgaaattaaggataatattaatgaggtaacactttgaaaagaac |
29739096 |
T |
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| Q |
168 |
agaaggactaatttagaatcaattatacaaaaacataatataaacacacataattt |
223 |
Q |
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| T |
29739097 |
agaaggactgattcaaaatcaattatacaaaaacataatataaacacacataattt |
29739152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 215
Target Start/End: Complemental strand, 5421894 - 5421759
Alignment:
| Q |
72 |
gacatttttactgtctcctttaatattactataatatgtaaattgggttgaacgaaattaagaataatatttatgaggtaacgctttgaaaagaacagaa |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| ||||||| |||| ||||||||||||||||| |
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| T |
5421894 |
gacatttttactgtctcctttaatattactataatatgtaaattgggtcgaacaagattaaggataatat--------taacactttgaaaagaacagaa |
5421803 |
T |
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| Q |
172 |
ggactaatttagaatcaattatacaaaaacataatataaacaca |
215 |
Q |
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|| | ||| |||||||| ||||||||||||||||||||||||| |
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| T |
5421802 |
tgattgattcagaatcaactatacaaaaacataatataaacaca |
5421759 |
T |
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