View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21540_low_18 (Length: 239)

Name: NF21540_low_18
Description: NF21540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21540_low_18
NF21540_low_18
[»] chr5 (13 HSPs)
chr5 (3-221)||(30060639-30060857)
chr5 (1-221)||(30749911-30750131)
chr5 (1-216)||(30713048-30713263)
chr5 (20-216)||(30483688-30483884)
chr5 (1-216)||(30436084-30436299)
chr5 (1-216)||(29853579-29853794)
chr5 (20-216)||(30338148-30338344)
chr5 (1-216)||(29872442-29872657)
chr5 (1-216)||(30400342-30400557)
chr5 (20-156)||(30242058-30242194)
chr5 (6-216)||(30206795-30207005)
chr5 (8-215)||(17983182-17983389)
chr5 (148-213)||(30676914-30676979)
[»] chr7 (1 HSPs)
chr7 (20-216)||(26707619-26707815)
[»] chr4 (3 HSPs)
chr4 (1-216)||(20296205-20296420)
chr4 (9-216)||(52352235-52352442)
chr4 (12-216)||(13616876-13617079)
[»] chr1 (2 HSPs)
chr1 (8-216)||(7581342-7581550)
chr1 (8-162)||(7099696-7099850)
[»] chr3 (1 HSPs)
chr3 (6-95)||(25293668-25293757)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 30060639 - 30060857
Alignment:
Q  3 tacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaaca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||||||||    
T  30060639 tacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaaca 30060738  T
Q  103 ttgttttagggctgccggtaaatataagtaactcaacctcaaatcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaatttta 202  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30060739 ttgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaatttta 30060838  T
Q  203 agccattccttttcatctt 221  Q
    |||||||||||||||||||    
T  30060839 agccattccttttcatctt 30060857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30749911 - 30750131
Alignment:
Q  1 attacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| ||||||||||| ||||||||||||    
T  30749911 attacccctagatgaaatcaatccattagccatccaaagccaaatcaatttttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaa 30750010  T
Q  101 cattgttttagggctgccggtaaatataagtaactcaacctcaaatcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattt 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30750011 cattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaatggaattttcatctgataaatcccaaagttcactatctttaattt 30750110  T
Q  201 taagccattccttttcatctt 221  Q
    |||||||||||||||||||||    
T  30750111 taagccattccttttcatctt 30750131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 30713263 - 30713048
Alignment:
Q  1 attacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaa 100  Q
    ||||||| |||||||||| |||||||||||||||||||| | |||||||||||| |||||||| ||| |||| || ||||||||||| ||||||||||||    
T  30713263 attacccatagatgaaataaatccattagccatccaaagtcgaatcaattcttcttttaggatttctctatccttgggaaatatagcacaaaaagagaaa 30713164  T
Q  101 cattgttttagggctgccggtaaatataagtaactcaacctcaaatcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattt 200  Q
    ||||| ||||||| ||  | |||||| |||||||||| ||||||| |||||||||| |||||||| | || |||| ||||||| |||||||||||||| |    
T  30713163 cattgctttagggttggtgataaataaaagtaactcagcctcaaagcaggcaaaatagaattttcttgtggtaaagcccaaagctcactgtctttaatat 30713064  T
Q  201 taagccattccttttc 216  Q
     ||||||||| |||||    
T  30713063 caagccattcattttc 30713048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 30483688 - 30483884
Alignment:
Q  20 aatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaacattgttttagggctgccg 119  Q
    |||||||||||||||||||||  ||||||||||||||| ||||| ||| ||||||| ||||||||||| ||||| ||||||||||| ||||||| ||  |    
T  30483688 aatccattagccatccaaagctgaatcaattcttccttcaggatttctctatctttgggaaatatagcacaaaaggagaaacattgctttagggttggtg 30483787  T
Q  120 gtaaatataagtaactcaacctcaaatcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttc 216  Q
     |||||| |||||||||||||||||| |||| ||||| || ||||||| || |||||||||||| |||||||||||||| | |||||||||||||||    
T  30483788 ttaaataaaagtaactcaacctcaaagcaggtaaaatagatttttcatgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttc 30483884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 30436084 - 30436299
Alignment:
Q  1 attacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaa 100  Q
    ||||||| |||||||||| ||| |||||||||||||||| | |||||||||||| |||||||| ||| |||| || ||||||||||| ||||||||||||    
T  30436084 attacccatagatgaaataaattcattagccatccaaagtcgaatcaattcttcttttaggatttctctatccttgggaaatatagcacaaaaagagaaa 30436183  T
Q  101 cattgttttagggctgccggtaaatataagtaactcaacctcaaatcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattt 200  Q
    ||||| ||||||| ||  | |||||| ||||||||||| |||||| | |||||||| |||||||| | || |||| ||||||| |||||||||||||| |    
T  30436184 cattgctttagggttggtgttaaataaaagtaactcaatctcaaagcgggcaaaatagaattttcttgtggtaaagcccaaagctcactgtctttaatat 30436283  T
Q  201 taagccattccttttc 216  Q
     |||||||||||||||    
T  30436284 caagccattccttttc 30436299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 29853579 - 29853794
Alignment:
Q  1 attacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaa 100  Q
    ||||||| |||||||||| ||||||||||||||||||||   |||||||||||| || ||||| |||  ||| || ||||||||||| ||||| ||||||    
T  29853579 attacccttagatgaaataaatccattagccatccaaagttgaatcaattcttctttcaggatttctccatccttgggaaatatagcgcaaaaggagaaa 29853678  T
Q  101 cattgttttagggctgccggtaaatataagtaactcaacctcaaatcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattt 200  Q
    ||||||||||||| ||  | |||||| |||||||||||||||||| || ||||||| |||||||| | || |||| ||||||| |||||||||||||| |    
T  29853679 cattgttttagggttggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttcttgtggtaaagcccaaagctcactgtctttaatat 29853778  T
Q  201 taagccattccttttc 216  Q
     |||||||||||||||    
T  29853779 caagccattccttttc 29853794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 30338344 - 30338148
Alignment:
Q  20 aatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaacattgttttagggctgccg 119  Q
    ||||||||||||||||||||   ||||||||||||||| ||||| ||| ||||||| ||||||||||| ||||| ||||||||||| ||||||| ||  |    
T  30338344 aatccattagccatccaaagttgaatcaattcttccttcaggatttctctatctttgggaaatatagcacaaaaggagaaacattgctttagggttggtg 30338245  T
Q  120 gtaaatataagtaactcaacctcaaatcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttc 216  Q
     |||||| ||||||||||| |||||| |||| ||||| || ||||||| || |||||||||||| |||||||||||||| | |||||||||||||||    
T  30338244 ttaaataaaagtaactcaaactcaaagcaggtaaaatagatttttcatgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttc 30338148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 29872442 - 29872657
Alignment:
Q  1 attacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaa 100  Q
    ||||||| |||||||||| ||| ||||||||||||||||   |||||||||||| || ||||| | | |||| || ||||||||||| ||||||||||||    
T  29872442 attacccatagatgaaataaattcattagccatccaaagttgaatcaattcttctttcaggatttttctatccttgggaaatatagcgcaaaaagagaaa 29872541  T
Q  101 cattgttttagggctgccggtaaatataagtaactcaacctcaaatcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattt 200  Q
    ||||| ||||||| ||  | |||||| |||||||||||||||||| || ||||||| |||||||| |  |||||| ||||||| |||||||| ||||| |    
T  29872542 cattgctttagggttggtgttaaataaaagtaactcaacctcaaagcaagcaaaatagaattttcttgcgataaagcccaaagctcactgtccttaatat 29872641  T
Q  201 taagccattccttttc 216  Q
     |||||||||||||||    
T  29872642 caagccattccttttc 29872657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 30400342 - 30400557
Alignment:
Q  1 attacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaa 100  Q
    |||||||| |||||||||||||||||||||||||||||||  |||||||||||| || | ||| ||  |||| || ||||||||||| ||||||||||||    
T  30400342 attaccccaagatgaaatcaatccattagccatccaaagctgaatcaattcttctttcaagatttccctatccttgggaaatatagcacaaaaagagaaa 30400441  T
Q  101 cattgttttagggctgccggtaaatataagtaactcaacctcaaatcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattt 200  Q
    ||||| |||||||  |  | |||||| ||||||||||||||||||  | |||||||  ||||||| |||| |||| ||||||| ||| |||||||||| |    
T  30400442 cattgctttagggtcggtgttaaataaaagtaactcaacctcaaagaacgcaaaatataattttcttctggtaaagcccaaagctcagtgtctttaatat 30400541  T
Q  201 taagccattccttttc 216  Q
     |||||||||||||||    
T  30400542 caagccattccttttc 30400557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 30242194 - 30242058
Alignment:
Q  20 aatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaacattgttttagggctgccg 119  Q
    |||||||||||||| || |||  ||||||||||||||| ||||| |||  |||||| ||||||||||| ||||||||||||||||||||||| | ||  |    
T  30242194 aatccattagccattcagagctgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagagttggtg 30242095  T
Q  120 gtaaatataagtaactcaacctcaaatcaggcaaaat 156  Q
     |||||| |||||||||||||||||| ||||||||||    
T  30242094 ttaaataaaagtaactcaacctcaaagcaggcaaaat 30242058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 30206795 - 30207005
Alignment:
Q  6 ccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaacattg 105  Q
    |||||||| |||| ||| ||||||||||||||||   ||||||||||||| | | ||  ||||||||||| ||||| ||||| ||||||| ||||||  |    
T  30206795 ccctagataaaataaattcattagccatccaaagatgaatcaattcttccctcacgaattctgtatctttgggaaacatagcacaaaaagcgaaacaccg 30206894  T
Q  106 ttttagggctgccggtaaatataagtaactcaacctcaaatcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagc 205  Q
     |||| || ||  | |||||  ||||| |||||||||||| |||| |||||  |||| |||| || |||| ||||||||||||| |||||||||| ||||    
T  30206895 ctttaaggttggagttaaatgaaagtagctcaacctcaaagcaggtaaaatataattctcatgtggtaaagcccaaagttcactctctttaatttcaagc 30206994  T
Q  206 cattccttttc 216  Q
    ||||| |||||    
T  30206995 cattctttttc 30207005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 17983182 - 17983389
Alignment:
Q  8 ctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaacattgtt 107  Q
    |||||||| || |||  |||||||||||||||   ||| | |||||| || | ||| ||||  ||||| ||||||||||| ||||||| |||||||||||    
T  17983182 ctagatgagataaatttattagccatccaaagatgaattagttcttctttcatgatttctgcttctttgggaaatatagcacaaaaagcgaaacattgtt 17983281  T
Q  108 ttagggctgccggtaaatataagtaactcaacctcaaatcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagcca 207  Q
    ||| || ||  | |||||  ||||| |||||||| | | | || ||||| ||||| ||||  | |||| |||| || || || |||||||||| || |||    
T  17983282 ttaaggttggtgataaatgaaagtagctcaaccttagagctgggaaaatagaattctcatgcggtaaagcccagagctcgctctctttaatttcaaacca 17983381  T
Q  208 ttcctttt 215  Q
    ||||||||    
T  17983382 ttcctttt 17983389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 30676979 - 30676914
Alignment:
Q  148 aggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattcctt 213  Q
    ||||||||| |||||||  | || |||| ||||||| |||||||||||||| | ||||||||||||    
T  30676979 aggcaaaatagaatttttttgtggtaaagcccaaagctcactgtctttaatatcaagccattcctt 30676914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 26707619 - 26707815
Alignment:
Q  20 aatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaacattgttttagggctgccg 119  Q
    ||||||||||||||||||||   ||||||||||||||| | ||| ||| ||||||| ||||||||||| ||||||||||||||||| ||||||| ||  |    
T  26707619 aatccattagccatccaaagttgaatcaattcttccttcaagatttctctatctttgggaaatatagcacaaaaagagaaacattgctttagggttggtg 26707718  T
Q  120 gtaaatataagtaactcaacctcaaatcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttc 216  Q
     |||||| |||||||||||||||||| |||||||||| || ||||| | || |||||||||||| |||||||||||||| | |||||||||||||||    
T  26707719 ttaaataaaagtaactcaacctcaaagcaggcaaaatagatttttcttgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttc 26707815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 20296420 - 20296205
Alignment:
Q  1 attacccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaa 100  Q
    ||||||| |||||||||| |||||||||||||||||||||  |||||||||||| || | ||| ||| |||| || ||||||||||| ||||||||||||    
T  20296420 attacccatagatgaaattaatccattagccatccaaagctgaatcaattcttctttcaagatttctctatccttaggaaatatagcacaaaaagagaaa 20296321  T
Q  101 cattgttttagggctgccggtaaatataagtaactcaacctcaaatcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattt 200  Q
    ||||| ||||| | ||  | |||||| |||||||||| ||||||| |||||||||| || ||||| | || |||| ||||||| ||| |||||||||| |    
T  20296320 cattgctttagagttggtgttaaataaaagtaactcagcctcaaagcaggcaaaatagatttttcttgtggtaaagcccaaaggtcattgtctttaatat 20296221  T
Q  201 taagccattccttttc 216  Q
     | |||||||||||||    
T  20296220 cacgccattccttttc 20296205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 52352235 - 52352442
Alignment:
Q  9 tagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaacattgttt 108  Q
    |||| ||||| |||||||| |||||||| ||   |||||| || || |||||||| || |||||||| |||||||| || || |||||||||||||||||    
T  52352235 tagacgaaataaatccattggccatccagagatgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacattgttt 52352334  T
Q  109 tagggctgccggtaaatataagtaactcaacctcaaatcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccat 208  Q
    || || || || |||||  || ||||||||||||||  |||||||||| ||||| ||||||||||||  |||||| |  || |||||||||| || ||||    
T  52352335 taaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccat 52352434  T
Q  209 tccttttc 216  Q
    ||||||||    
T  52352435 tccttttc 52352442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 13616876 - 13617079
Alignment:
Q  12 atgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaacattgttttag 111  Q
    ||||||| ||| ||||||||||||||||   ||||||||||||||||  ||| | ||||||||| ||||||| | | || |||| ||| |||||||| |     
T  13616876 atgaaataaattcattagccatccaaagatgaatcaattcttcctttgtgatttttgtatctttaggaaatacaacacagaaagcgaatcattgtttaaa 13616975  T
Q  112 ggctgccggtaaatataagtaactcaacctcaaatcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattcc 211  Q
    || || || |||||  |||||||||| |||||||||||| ||||| ||||| ||||    |||||||||||| || || ||| |||||| |  |||||||    
T  13616976 ggttggcgataaat-gaagtaactcagcctcaaatcaggaaaaatagaattctcataccgtaaatcccaaagctcgctctctctaatttcacaccattcc 13617074  T
Q  212 ttttc 216  Q
    |||||    
T  13617075 ttttc 13617079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 7581550 - 7581342
Alignment:
Q  8 ctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaacattgtt 107  Q
    ||||||||||| ||| ||||||||||||||||   ||||||||||||||| | ||| | ||||||||| ||||||||||| ||||||| |||||||||||    
T  7581550 ctagatgaaataaattcattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttaggaaatatagcacaaaaagcgaaacattgtt 7581451  T
Q  108 ttagggctgccggtaaatataagtaactcaacctcaaatcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagcca 207  Q
    ||| || ||  | |||||  ||||| ||||| |||| | | |||||| | ||||| ||||  | |||||||||||| || || |||||||||| || |||    
T  7581450 ttaaggttggtgataaatgaaagtagctcaatctcagagctggcaaagtagaattctcatgcggtaaatcccaaagctcgctctctttaatttcaaacca 7581351  T
Q  208 ttccttttc 216  Q
    |||||||||    
T  7581350 ttccttttc 7581342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 7099696 - 7099850
Alignment:
Q  8 ctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaagagaaacattgtt 107  Q
    ||||||||||| ||||||||||||||||||||   ||||||||||||||| | ||| | |||||||||  |||||||||| ||||||| |||||||||||    
T  7099696 ctagatgaaataaatccattagccatccaaagatgaatcaattcttccttcatgatttttgtatctttgcgaaatatagcacaaaaagcgaaacattgtt 7099795  T
Q  108 ttagggctgccggtaaatataagtaactcaacctcaaatcaggcaaaatggaatt 162  Q
    ||| || ||  | |||||  ||||| |||||||||||| | |||||||| |||||    
T  7099796 ttaaggttggtgataaatggaagtagctcaacctcaaagctggcaaaatagaatt 7099850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 25293757 - 25293668
Alignment:
Q  6 ccctagatgaaatcaatccattagccatccaaagccaaatcaattcttcctttaggatatctgtatcttttggaaatatagcccaaaaag 95  Q
    ||||||||||||| ||||||||||||||||||||   | |||||||||||||   ||| | ||||||||||||||| ||||| |||||||    
T  25293757 ccctagatgaaataaatccattagccatccaaagatgagtcaattcttccttatcgatttttgtatcttttggaaacatagcacaaaaag 25293668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University