View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21540_low_19 (Length: 237)
Name: NF21540_low_19
Description: NF21540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21540_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 15762910 - 15762695
Alignment:
| Q |
5 |
ttttattaaaagtcatttacaaatgttttagcgataatgatataatataaacatgatgatgttttatcttatcttagtcaatgt---ttcatgtgtatct |
101 |
Q |
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| T |
15762910 |
ttttattaaaagtcatttactaatgttttagcgataatgatataatataaacatgatgatgttttatcttatcttatccaatgtttgttcatgtgtatct |
15762811 |
T |
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| Q |
102 |
gatgataaattagaatatactaccatataatgttccattacatattttaggaaaacaaataatttatagatatattatatgtaaatagaaaaattacaat |
201 |
Q |
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| T |
15762810 |
gatgataaattagaata---taccatataatgttctattacatattttacgaaatcaaataa-ttatagatatattatatgtaaatgaaaaaattacaat |
15762715 |
T |
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| Q |
202 |
gtgtgaaaaattatatttaat |
222 |
Q |
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||||| | ||||||||||||| |
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| T |
15762714 |
gtgtg-acaattatatttaat |
15762695 |
T |
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