View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21540_low_3 (Length: 484)
Name: NF21540_low_3
Description: NF21540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21540_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 23 - 467
Target Start/End: Original strand, 20925715 - 20926159
Alignment:
| Q |
23 |
gataccctatgcctcctcatgtgtccacccaatgcttgtccggatgtgaactctgaaccacaaatggaacactcatgaatcttggccttgttcccattaa |
122 |
Q |
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| T |
20925715 |
gataccctatgcctcctcatgtgtccacccaatgcttgtccggatgtgaactctgaaccacaaatggaacactcatgaatcttggccttgttcccattaa |
20925814 |
T |
|
| Q |
123 |
tagctgctttcaaaccatgattccccatttgaaaagaaaccatgggcccacgaggtttctcagcttcttcatactcatcactattcgcaaccagattatc |
222 |
Q |
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| T |
20925815 |
tagctgctttcaaaccatgattccccatttgaaaagaaaccatgggcccacgaggtttctcagcttcttcatactcatcactattcgcaaccagattatc |
20925914 |
T |
|
| Q |
223 |
tgattgcgaatcatgtgatgaagactgtggacgaggctgctgcgacggttgtgatggtggtttcttctcctcagccataattttaggttttttgtgactt |
322 |
Q |
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| T |
20925915 |
tgattgcgaatcatgtgatgaagactgtggacgaggctgctgcgacggtggtgatggtggtttcttctcctcagccataattttaggttttttgtgactt |
20926014 |
T |
|
| Q |
323 |
gccctgtgaccacccaaagcttgaaaagaaggaaaagttctgttacatgttttgcattcataaatatacaaaccaagttttgtgctagtctcaccaannn |
422 |
Q |
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| T |
20926015 |
gccctgtgaccacccaaagcttgaaaagaaggaaaagttctgttacatgttttgcattcataaatatacaaaccaagttttgtgctagtctcaccaattt |
20926114 |
T |
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| Q |
423 |
nnnnatttccatgactacccttttcccttttattctcatcaacaa |
467 |
Q |
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| T |
20926115 |
ttttatttccatgactaccctttacccttttattctcatcaacaa |
20926159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 397
Target Start/End: Complemental strand, 40689757 - 40689668
Alignment:
| Q |
308 |
ggttttttgtgacttgccctgtgaccacccaaagcttgaaaagaaggaaaagttctgttacatgttttgcattcataaatatacaaacca |
397 |
Q |
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| T |
40689757 |
ggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacatagaaacca |
40689668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 40689977 - 40689900
Alignment:
| Q |
37 |
cctcatgtgtccacccaatgcttgtccggatgtgaactctgaaccacaaatggaacactcatgaatcttggccttgtt |
114 |
Q |
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| T |
40689977 |
cctcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaaccttagacttgtt |
40689900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 382
Target Start/End: Original strand, 7687872 - 7687946
Alignment:
| Q |
308 |
ggttttttgtgacttgccctgtgaccacccaaagcttgaaaagaaggaaaagttctgttacatgttttgcattca |
382 |
Q |
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| T |
7687872 |
ggtttcttgtgacttgccctatgaccacctagggcttgaaatgaaggaaattgtctattacatgttttacattca |
7687946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 25824189 - 25824222
Alignment:
| Q |
30 |
tatgcctcctcatgtgtccacccaatgcttgtcc |
63 |
Q |
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| T |
25824189 |
tatgccttctcatgtgtccacccaatgcttgtcc |
25824222 |
T |
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