View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21540_low_4 (Length: 440)
Name: NF21540_low_4
Description: NF21540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21540_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 216 - 424
Target Start/End: Original strand, 32856990 - 32857198
Alignment:
| Q |
216 |
taaatatagtctattttattcatatctgaattatttatttatgcttcctttatagggtcaaatatggcattgaattgtgacaatccaagtcaatccacta |
315 |
Q |
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| T |
32856990 |
taaatatagtctattttattcatatctgaattatttatttatgcttcctttatagggtcaaatatggcattgaatagtgacaatccaagtcaatccacta |
32857089 |
T |
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| Q |
316 |
gcaggtattaaactggccaaaaagttttgatagttaagtttgcactcgtgatgtcggttggaagattagttttgtcctattatcgtagagtaatcacatt |
415 |
Q |
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| T |
32857090 |
gcaggtattaaactggccaaaaagttatgatagttaagtttgcactcgtgatgtcggttggaagattagttttgtcctattatcgtagagtaatcacatt |
32857189 |
T |
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| Q |
416 |
attgggtca |
424 |
Q |
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| T |
32857190 |
attgggtca |
32857198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 32856635 - 32856851
Alignment:
| Q |
4 |
ttttcatgatgaatatgactgatttctgttttccatttcgaatgtatatctatctaatgttacgaaatatttgtaggtaatgtccatgagttcattcaga |
103 |
Q |
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| T |
32856635 |
ttttcatgatgaatatgactgatttctgttttccatttcgaatgtatatctatctaatattacgaaatatttgcaggtaatgtccatgagttcattcaga |
32856734 |
T |
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| Q |
104 |
tttcatcatgtgcnnnnnnnngaagaaaaatcctgagttatactactatcattgcagcttcggtgagttcaatcaaactttggatgtattttttgctgat |
203 |
Q |
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| T |
32856735 |
tttcatcatgtgcttttttttgaagaa------------atactactatcattgcagcttcggtgagttcaatcaaactttgggtgtattttttgttgat |
32856822 |
T |
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| Q |
204 |
tgaactttagattaaatatagtctatttt |
232 |
Q |
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| T |
32856823 |
tgaactttagattaaatatagtctgtttt |
32856851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 356
Target Start/End: Original strand, 32859100 - 32859195
Alignment:
| Q |
263 |
ctttatagggtcaaatatggcattgaattgtgacaatcca----agtcaatccactagcaggtattaaactggccaaaaagttttgatagttaagttt |
356 |
Q |
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| T |
32859100 |
ctttatagggtcaaatatggcattgaattgtgatgatccaggtcaatcaatccactagcaggtattttattggctaaaa--ttttgatagttaagttt |
32859195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 32858961 - 32859037
Alignment:
| Q |
165 |
ggtgagttcaatcaaactttggatgtattttt-tgctgattgaactttagattaaatatagtctattttattcatat |
240 |
Q |
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| T |
32858961 |
ggtgagctcaatcaaactttagatgttttttcctggtgaatgaactttagattaaattaattctattttattcatat |
32859037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 32847944 - 32847986
Alignment:
| Q |
137 |
tgagttatactactatcattgcagcttcggtgagttcaatcaa |
179 |
Q |
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| T |
32847944 |
tgagttatactactattattgcagtttctgtgagttcaatcaa |
32847986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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