View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21540_low_5 (Length: 431)
Name: NF21540_low_5
Description: NF21540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21540_low_5 |
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| [»] scaffold1337 (1 HSPs) |
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| [»] scaffold0067 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 215 - 413
Target Start/End: Original strand, 30579508 - 30579706
Alignment:
| Q |
215 |
gttaggaacaagatattgaggaagaggattcatgtccgagtggagcatgttatgccatcaaggtgcactgaggagttcaggttgaggaagatcaagaatg |
314 |
Q |
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| T |
30579508 |
gttaggaacaagatattgaggaagaggatccatgtccgagtggagcatgttatgccatcaaggtgcactgaggagttcagattgaggaagatcaagaatg |
30579607 |
T |
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| Q |
315 |
atcaattgaaggctgaggctaaggccaagggagaggtgataagcaccaagcccaagccagagggccccaaacctggtttcatggtcgaaggtgctacat |
413 |
Q |
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| T |
30579608 |
atcaattgaaggctgaggctaaggccaagggagaggtgataagcaccaagcgcaagccagagggccccaaacctggtttcatggtcgaaggtgctacat |
30579706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 30578369 - 30578575
Alignment:
| Q |
11 |
cagagattcattctctcgtcccttccgcaagaagggaacaatagccttagccacctacctcaggacctatcatatcggcgactatgtcgatattagagtt |
110 |
Q |
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| T |
30578369 |
cagagattcattctctcgtcccttccgcaagaagggaacaatagccttagccacctacctcaggacctatcatatcggcgactatgtcgatattagagtt |
30578468 |
T |
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| Q |
111 |
aacggagctgtgcacaaaggtatgccgcacaaattctacca-ggtcgtaccagtcgtgtctgcaatgtgactaagcgggtcattggtgttgaagtcaata |
209 |
Q |
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| T |
30578469 |
aacggagctgtgcacaaaggtatgccgcacaaattctaccacggtcgtaccggtcgtgtctggaatgtgactaagcgtgccattggtgttgaagtcaata |
30578568 |
T |
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| Q |
210 |
agcaagt |
216 |
Q |
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| T |
30578569 |
agcaagt |
30578575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 21257183 - 21257252
Alignment:
| Q |
15 |
gattcattctctcgtcccttccgcaagaagggaacaatagccttagccacctacctcaggacctatcatat |
85 |
Q |
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| T |
21257183 |
gattcgttctcttgtccattccccaagaaaggaacaatagccctagctacatacctcagga-ctatcatat |
21257252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 218 - 413
Target Start/End: Original strand, 43829255 - 43829450
Alignment:
| Q |
218 |
aggaacaagatattgaggaagaggattcatgtccgagtggagcatgttatgccatcaaggtgcactgaggagttcaggttgaggaagatcaagaatgatc |
317 |
Q |
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| T |
43829255 |
aggaacaagattctcaggaagagaatccacgttcgagtggagcatgttatgccttctaggtgcactgaggagttccgtttgaggaagattaagaatgatc |
43829354 |
T |
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| Q |
318 |
aattgaaggctgaggctaaggccaagggagaggtgataagcaccaagcccaagccagagggccccaaacctggtttcatggtcgaaggtgctacat |
413 |
Q |
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| T |
43829355 |
aacttaaggctgaggctaaggcaaagggtgaagtcattagcaccaagcgcaagccagagggacctaaacctggtttcatggtcgaaggagctacat |
43829450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 43828404 - 43828552
Alignment:
| Q |
12 |
agagattcattctctcgtcccttccgcaagaagggaacaatagccttagccacctacctcaggacctatcatatcggcgactatgtcgatattagagtta |
111 |
Q |
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||||| || ||||||||||| ||| | |||||||| ||||| ||| | ||||| |||||||| |||||||| |||||||| ||||| ||| | || |||| |
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| T |
43828404 |
agagactctttctctcgtccattcaggaagaagggtacaatcgcccttgccacttacctcagaacctatcacatcggcgattatgttgatgtcagggtta |
43828503 |
T |
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| Q |
112 |
acggagctgtgcacaaaggtatgccgcacaaattctacca-ggtcgtac |
159 |
Q |
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| T |
43828504 |
acggtgctgtacacaagggtatgcctcataagttctaccacggtcgtac |
43828552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1337 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1337
Description:
Target: scaffold1337; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 639 - 688
Alignment:
| Q |
66 |
tacctcaggacctatcatatcggcgactatgtcgatattagagttaacgg |
115 |
Q |
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| T |
639 |
tacctcagaacttatcatatcggtgactatgtcgatattaggattaacgg |
688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 18359 - 18310
Alignment:
| Q |
66 |
tacctcaggacctatcatatcggcgactatgtcgatattagagttaacgg |
115 |
Q |
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| T |
18359 |
tacctcagaacttatcatatcggtgactatgtcgatattaggattaacgg |
18310 |
T |
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