View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21540_low_6 (Length: 335)
Name: NF21540_low_6
Description: NF21540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21540_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 314
Target Start/End: Original strand, 36025604 - 36025907
Alignment:
| Q |
11 |
gaagcataggacaaaaacctaatgaagcaggaattgaacctgttaacctattattgaagagttgaacacctcttagattgttgagaagtcctaatgttga |
110 |
Q |
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| T |
36025604 |
gaagcataggacaaaaacctaatgaagcaggaattgaacctgttaacctattattgaagagttgaacacctcttagattgttgagaagtcctaatgttga |
36025703 |
T |
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| Q |
111 |
agggattgaaccaccaatttggttattatgaagactaagctttcttagaccttcaagttgaccaatcctttcagtgattctccccttcaatcctttccat |
210 |
Q |
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| T |
36025704 |
agggattgaaccaccaatttggttattatgaagactaagctttctaagaccttcaagttgaccaatcctctcagtgattctccccttcaatcctttccat |
36025803 |
T |
|
| Q |
211 |
ggaagctgaattataatcacttttccttgagcacatttgattccaacccaacctccagaacaagctccaaagccactatcattccagcttctcaagaacc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
36025804 |
ggaagctgaattataatcacttttccttgagcacatttgattccaacccaacctccagaacaagctccaaagccactatcattccagcttcttaagaaac |
36025903 |
T |
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| Q |
311 |
cttt |
314 |
Q |
| |
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|||| |
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| T |
36025904 |
cttt |
36025907 |
T |
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