View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21540_low_9 (Length: 311)
Name: NF21540_low_9
Description: NF21540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21540_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 6 - 276
Target Start/End: Original strand, 36739396 - 36739666
Alignment:
| Q |
6 |
agagagaagaacagatacttgtttacaattatgtcaatttttcaagaagtaccgaggggaaagtttatctacaaccacacattcaagacaactataaaat |
105 |
Q |
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| T |
36739396 |
agagagaagaacagatacttgtttacaattatgtcaatttttcaagaagtaccgaggggaaagtttatctactatcacacattcaagacaactataaaat |
36739495 |
T |
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| Q |
106 |
atcactaggacacaccttaagaatggatatcatattaagaagtgtataaaagaccgaaacttagaaacaagagttattctcaatcagtcaaaaccttaat |
205 |
Q |
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| T |
36739496 |
atcactaggacacaccttaagaatggatatcatattaagaagtgtataaaagacagaaacttagaaacaaaagttattctcaatcagtcaaaacattaat |
36739595 |
T |
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| Q |
206 |
aaacctgttgcagctttaggggaggtttattacagacatcacagttagtagagaaacaaaatatacctaat |
276 |
Q |
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| T |
36739596 |
aaacctactgcagctttagggggggtttattacagacatcacagttagtagagaaacaaaatatacctaat |
36739666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 137 - 270
Target Start/End: Original strand, 36737900 - 36738033
Alignment:
| Q |
137 |
atattaagaagtgtataaaagaccgaaacttagaaacaagagttattctcaatcagtcaaaaccttaataaacctgttgcagctttaggggaggtttatt |
236 |
Q |
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| T |
36737900 |
atattaagaagtgtataaaagacagaaacttagaaacaagagttattctcaatcaatcaaaacattaataaacctgctgcagctttaggggaggtttatt |
36737999 |
T |
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| Q |
237 |
acagacatcacagttagtagagaaacaaaatata |
270 |
Q |
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| T |
36738000 |
acagacatcacagttagtagagaaacgaaatata |
36738033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 36737866 - 36737903
Alignment:
| Q |
232 |
ttattacagacatcacagttagtagagaaacaaaatat |
269 |
Q |
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| T |
36737866 |
ttattacagacatcacagttagcagagaaacaaaatat |
36737903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 36739286 - 36739326
Alignment:
| Q |
225 |
gggaggtttattacagacatcacagttagtagagaaacaaa |
265 |
Q |
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| T |
36739286 |
gggaggtttattacaggcatcacagttagcagagaaacaaa |
36739326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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