View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21541_high_4 (Length: 265)
Name: NF21541_high_4
Description: NF21541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21541_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 5 - 254
Target Start/End: Original strand, 27637543 - 27637792
Alignment:
| Q |
5 |
taaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcc |
104 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27637543 |
taaatcgaattctgaatctcgataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcc |
27637642 |
T |
|
| Q |
105 |
tacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctgacttcttcctt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27637643 |
tacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctgacttcttcctt |
27637742 |
T |
|
| Q |
205 |
ttcaccacaacttgattccgcgtcattttccaccaacatccttactctct |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27637743 |
ttcaccacaacttgattccgcgtcattttccaccaacatccttactctct |
27637792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 254
Target Start/End: Original strand, 37353736 - 37353985
Alignment:
| Q |
5 |
taaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcc |
104 |
Q |
| |
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|||||| |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37353736 |
taaatcaaattttgaatctcgataatacccttctttgccattccacagattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcc |
37353835 |
T |
|
| Q |
105 |
tacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctgacttcttcctt |
204 |
Q |
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||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||| ||||||||||| |
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| T |
37353836 |
tacatggaagaactaagacaccaagagtgtgtgtcttatactttgaacaaaacaaattcttttcacgtcttacatgcttttgagctcttacttcttcctt |
37353935 |
T |
|
| Q |
205 |
ttcaccacaacttgattccgcgtcattttccaccaacatccttactctct |
254 |
Q |
| |
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||| ||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
37353936 |
ttctccacaacttgattccgcatcattttccaccaacatcgttactctct |
37353985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 254
Target Start/End: Original strand, 37365710 - 37365959
Alignment:
| Q |
5 |
taaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcc |
104 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37365710 |
taaatcaaattttgaatctcgataatacccttctttgccattccacagattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcc |
37365809 |
T |
|
| Q |
105 |
tacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctgacttcttcctt |
204 |
Q |
| |
|
||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||| ||||||||||| |
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| T |
37365810 |
tacatggaagaactaagacaccaagagtgtgtgtcttatactttgaacaaaacaaattcttttcacgtcttacatgcttttgagctcttacttcttcctt |
37365909 |
T |
|
| Q |
205 |
ttcaccacaacttgattccgcgtcattttccaccaacatccttactctct |
254 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
37365910 |
ttctccacaacttgattccgcatcattttccaccaacatcgttactctct |
37365959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 187
Target Start/End: Complemental strand, 12292680 - 12292496
Alignment:
| Q |
6 |
aaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcct |
105 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| ||||||||| |||||||| | || ||||||||| | |||||||||||||||||| |||||||| |
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| T |
12292680 |
aaatcaaattctgaatctcaataacacccttctttttcattccacacattggacaggcttcgagtaaagcttcacatgctttgcatgaagaaagatgcct |
12292581 |
T |
|
| Q |
106 |
acatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaaca---cattgttttcacgtcttacacgcttttca |
187 |
Q |
| |
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|||||| | |||||||||| | | |||||| |||||||||| |||||||| ||||||| ||||||| |||||||||||| |
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| T |
12292580 |
acatggtataaataagacatctgaggagtttgtgttacactttggacaaaacatagtattgtttccacgtctgacacgcttttca |
12292496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 12242929 - 12242707
Alignment:
| Q |
17 |
tgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggcagaa |
116 |
Q |
| |
|
||||| ||||||| ||| |||||| |||||||||| |||||||||| || |||| |||| | ||| |||||||||||||| ||||| ||||||||||||| |
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| T |
12242929 |
tgaatttcaataacaccattcttttccattccacagattggacaagctttgagtgaagcttcacacgctttgcatgaagaaagatgtctacatggcagaa |
12242830 |
T |
|
| Q |
117 |
ataagacaccaagagtgtttgtcttacactttgaacaaaac---acattgttttcacgtcttacacgcttttcagctctgacttcttccttttcaccaca |
213 |
Q |
| |
|
|||||||| | || | |||| ||||| |||| ||||||| | ||||||| ||||||| ||||| |||||| ||| || || || |||||||| || |
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|
| T |
12242829 |
ataagacatccgaagagcttgtgttacattttggacaaaacataatattgtttccacgtctaacacgtttttcaattcttacatcatcattttcaccgca |
12242730 |
T |
|
| Q |
214 |
acttgattccgcgtcattttcca |
236 |
Q |
| |
|
|| ||| | || |||||||||| |
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| T |
12242729 |
acatgagtttgcatcattttcca |
12242707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 34697785 - 34698036
Alignment:
| Q |
6 |
aaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcct |
105 |
Q |
| |
|
|||| ||| |||| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||| |||| |||||||| |
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|
| T |
34697785 |
aaattgaactctggatctcaataacatccttctttgccattccacatattggacaagtttggagtaaagcttcacattgtttgcataaagatagatgcct |
34697884 |
T |
|
| Q |
106 |
acatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaa---cacattgttttcacgtcttacacgcttttcagctctgacttcttcc |
202 |
Q |
| |
|
|||||| |||||||||||||||| | |||||||||||||||||||||||| || ||||| || | ||| | |||||||||||||| ||||||| |
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|
| T |
34697885 |
acatggaagaaataagacaccaacaaagtttgtcttacactttgaacaaaacttcaaattgtcgtcgcttctcatgcgcttttcagctcttgcttcttca |
34697984 |
T |
|
| Q |
203 |
ttttcaccacaacttgattccgcgtcattttccaccaacatccttactctct |
254 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||| | ||||||| |||||| |
|
|
| T |
34697985 |
ctttcaccgcaacatgattccgcgtcatttagcacaaccatccttgctctct |
34698036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 34720197 - 34720448
Alignment:
| Q |
6 |
aaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcct |
105 |
Q |
| |
|
|||| ||| |||| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||| |||| |||||||| |
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|
| T |
34720197 |
aaattgaactctggatctcaataacatccttctttgccattccacatattggacaagtttggagtaaagcttcacattgtttgcataaagatagatgcct |
34720296 |
T |
|
| Q |
106 |
acatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaa---cacattgttttcacgtcttacacgcttttcagctctgacttcttcc |
202 |
Q |
| |
|
|||||| |||||||||||||||| | |||||||||||||||||||||||| || ||||| || | ||| | |||||||||||||| ||||||| |
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|
| T |
34720297 |
acatggaagaaataagacaccaacaaagtttgtcttacactttgaacaaaacttcaaattgtcgtcgcttctcatgcgcttttcagctcttgcttcttca |
34720396 |
T |
|
| Q |
203 |
ttttcaccacaacttgattccgcgtcattttccaccaacatccttactctct |
254 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||| | ||||||| |||||| |
|
|
| T |
34720397 |
ctttcaccgcaacatgattccgcgtcatttagcacaaccatccttgctctct |
34720448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 27909926 - 27910007
Alignment:
| Q |
15 |
tctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaaga |
96 |
Q |
| |
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||||||||||||||| | |||||||| |||||||||| ||||||||| || ||||||||| | ||| ||||||||||||| |
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| T |
27909926 |
tctgaatctcaataacatccttcttttccattccacatattggacaaacttcgagtaaagcttcacacactttgcatgaaga |
27910007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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