View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21541_low_2 (Length: 336)

Name: NF21541_low_2
Description: NF21541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21541_low_2
NF21541_low_2
[»] chr2 (11 HSPs)
chr2 (29-282)||(13148184-13148437)
chr2 (79-283)||(8179705-8179909)
chr2 (132-283)||(24584772-24584926)
chr2 (29-201)||(11502762-11502934)
chr2 (29-283)||(37280969-37281222)
chr2 (179-283)||(45368792-45368896)
chr2 (180-283)||(452782-452885)
chr2 (32-202)||(28409802-28409970)
chr2 (189-268)||(33251337-33251416)
chr2 (191-268)||(7789656-7789733)
chr2 (230-283)||(14769368-14769421)
[»] chr5 (9 HSPs)
chr5 (79-283)||(24177436-24177640)
chr5 (90-283)||(2076640-2076833)
chr5 (79-283)||(20317903-20318107)
chr5 (31-283)||(1288694-1288947)
chr5 (30-275)||(26821-27067)
chr5 (182-252)||(22832091-22832161)
chr5 (188-267)||(37123591-37123672)
chr5 (180-283)||(25937109-25937213)
chr5 (189-274)||(756129-756214)
[»] chr7 (12 HSPs)
chr7 (88-283)||(36650915-36651110)
chr7 (79-283)||(11592601-11592805)
chr7 (79-283)||(33350972-33351176)
chr7 (31-283)||(32629475-32629728)
chr7 (88-283)||(24178361-24178556)
chr7 (162-280)||(38896612-38896730)
chr7 (182-283)||(39907545-39907646)
chr7 (144-281)||(17101752-17101887)
chr7 (217-283)||(46357003-46357069)
chr7 (132-225)||(33738551-33738646)
chr7 (160-254)||(20499102-20499196)
chr7 (231-283)||(22346576-22346628)
[»] chr6 (10 HSPs)
chr6 (79-281)||(6082301-6082503)
chr6 (31-283)||(5260414-5260667)
chr6 (88-261)||(20428825-20428998)
chr6 (160-283)||(30669888-30670011)
chr6 (79-267)||(26290696-26290884)
chr6 (31-196)||(9705661-9705827)
chr6 (150-274)||(3629249-3629373)
chr6 (180-259)||(30243773-30243851)
chr6 (216-264)||(2681621-2681669)
chr6 (167-252)||(9369590-9369673)
[»] chr4 (11 HSPs)
chr4 (31-283)||(23907468-23907721)
chr4 (88-283)||(48623693-48623888)
chr4 (146-283)||(27451339-27451476)
chr4 (31-274)||(16001117-16001359)
chr4 (179-282)||(1778184-1778287)
chr4 (88-267)||(56224684-56224863)
chr4 (202-283)||(435267-435348)
chr4 (180-281)||(39707477-39707579)
chr4 (213-275)||(53703655-53703717)
chr4 (180-261)||(55769560-55769641)
chr4 (180-261)||(55833816-55833897)
[»] chr1 (9 HSPs)
chr1 (79-283)||(51441930-51442134)
chr1 (79-283)||(49348568-49348771)
chr1 (132-283)||(8670883-8671034)
chr1 (153-283)||(43241547-43241677)
chr1 (117-283)||(29173695-29173863)
chr1 (90-283)||(32405627-32405818)
chr1 (178-274)||(11681832-11681928)
chr1 (29-281)||(35829559-35829810)
chr1 (213-267)||(34828267-34828321)
[»] chr8 (9 HSPs)
chr8 (88-283)||(36544073-36544268)
chr8 (88-267)||(15216451-15216630)
chr8 (79-260)||(13588619-13588800)
chr8 (193-283)||(42855181-42855271)
chr8 (144-222)||(41148467-41148544)
chr8 (79-256)||(33667048-33667224)
chr8 (146-248)||(31977595-31977697)
chr8 (226-283)||(41445408-41445465)
chr8 (192-256)||(11131142-11131206)
[»] chr3 (6 HSPs)
chr3 (79-281)||(38849014-38849216)
chr3 (88-283)||(51448875-51449070)
chr3 (88-281)||(3368684-3368877)
chr3 (163-283)||(52137824-52137944)
chr3 (169-283)||(27916580-27916694)
chr3 (189-282)||(48220802-48220895)
[»] scaffold0113 (1 HSPs)
scaffold0113 (77-283)||(13424-13629)
[»] scaffold0083 (1 HSPs)
scaffold0083 (126-247)||(52130-52251)
[»] scaffold0018 (1 HSPs)
scaffold0018 (219-283)||(30520-30584)
[»] scaffold0220 (1 HSPs)
scaffold0220 (182-266)||(25392-25476)
[»] scaffold0045 (1 HSPs)
scaffold0045 (242-282)||(90257-90297)
[»] scaffold0073 (1 HSPs)
scaffold0073 (146-248)||(20506-20608)
[»] scaffold0606 (1 HSPs)
scaffold0606 (180-260)||(8706-8784)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 29 - 282
Target Start/End: Original strand, 13148184 - 13148437
Alignment:
Q  29 ttgaagtgtggaaaagtcttggagatataagaatcatatggctcatcaattttttagcaagattatgaggacaaataaaatgttggatgagtggataaga 128  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13148184 ttgaagtgtggaaaagtcttggagatataagaatcatgtggctcaccaattttttagcaagattacgaggacaaataaaatgttggatgagtggataaga 13148283  T
Q  129 agtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaa 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13148284 agtactttatttccaatttataagaacaaaggggatatacaaaattgcttggattataggggaattaaactaatgagtcttaccatgaagttatgggaaa 13148383  T
Q  229 gggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttg 282  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  13148384 gggtgattgaatgaagactaagaaaagagactcgagttatcgataaccaatttg 13148437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 79 - 283
Target Start/End: Original strand, 8179705 - 8179909
Alignment:
Q  79 tttttagcaagattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgctt 178  Q
    |||||| | ||||||||||||| || |||||||  || ||||||| |||||| |||||| ||||||| ||||||||||| | ||||||||||||||||      
T  8179705 tttttaacgagattatgaggacgaagaaaatgtcagacgagtggagaagaagcactttaattccaatctataagaacaaggaggatatacaaaattgcgc 8179804  T
Q  179 gaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaa 278  Q
    |||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||| ||    
T  8179805 gaattataggggaattaagctaataagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaa 8179904  T
Q  279 tttgg 283  Q
    |||||    
T  8179905 tttgg 8179909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 132 - 283
Target Start/End: Complemental strand, 24584926 - 24584772
Alignment:
Q  132 actttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaaggg 231  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  24584926 actttaattccaatctataagaacaaaggggatatacaaaattgcacgaattataggggaattaagctaatgagtcataccatgaagttatgggaaaggg 24584827  T
Q  232 tg---attgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    ||   ||||||  |||||||||||| |||||||||||||  ||||||| ||||||    
T  24584826 tgattattgaacaaagactaagaaaggagactcgagttatagataactgatttgg 24584772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 11502934 - 11502762
Alignment:
Q  29 ttgaagtgtggaaaagtcttggagatataagaatcatatggctcatcaattttt-tagcaagattatgaggacaaataaaatgttggatgagtggataag 127  Q
    ||||||||||||||||||||||||||| | ||||  | ||||||| |||| ||| || | ||||||||||||||||||||||||| |||||||||| |||    
T  11502934 ttgaagtgtggaaaagtcttggagataaaggaatagtgtggctcaccaatctttctaactagattatgaggacaaataaaatgttcgatgagtggagaag 11502835  T
Q  128 aagtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaa 201  Q
    ||  |||||| || | || |||||||||||||| | |||||||||||||  |||||||||| ||||||||||||    
T  11502834 aaacactttaatttcgatctataagaacaaaggtg-tatacaaaattgcacgaattataggagaattaaactaa 11502762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 283
Target Start/End: Original strand, 37280969 - 37281222
Alignment:
Q  29 ttgaagtgtggaaaagtcttggagatataagaatcatatggctcatcaatt-ttttagcaagattatgaggacaaataaaatgttggatgagtggataag 127  Q
    ||||||||||||||||||||||| ||| | ||||  | ||||||| |||   ||||| | ||| |||||||||||  ||||||| |||||| |||| |||    
T  37280969 ttgaagtgtggaaaagtcttggatatagaggaattgtgtggctcaccaaacattttaacgagactatgaggacaac-aaaatgtcggatgaatggagaag 37281067  T
Q  128 aagtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaa 227  Q
    ||   ||||| || | || ||||||||||| ||||||||||||||||||  |||||||||| ||||||||||||||| || |||||||||||||||  ||    
T  37281068 aaacgctttaatttcgatctataagaacaa-ggggatatacaaaattgcgcgaattataggagaattaaactaatgaatcataccatgaagttatgataa 37281166  T
Q  228 agggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    |  ||||||||| |||||||||| ||| | |||  |||||| |||||| |||||||    
T  37281167 aaagtgattgaacgaagactaagtaaacaaacttaagttactgataaccaatttgg 37281222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 45368896 - 45368792
Alignment:
Q  179 gaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaa 278  Q
    |||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||| |||||||||||||||||||||  ||||| |||||| ||    
T  45368896 gaattataggggaattaagctaatgagtcataccatgaaattatgggaaagggtaattgaacgaagactaagaaaagagactcatgttacggataaccaa 45368797  T
Q  279 tttgg 283  Q
    |||||    
T  45368796 tttgg 45368792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 452885 - 452782
Alignment:
Q  180 aattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaat 279  Q
    ||||||||||||||||| |||||||||| ||||||||||||| | ||||||||||| ||| ||||||||||||| |||||||||||||| |||||| |||    
T  452885 aattataggggaattaagctaatgagtcataccatgaagttacgagaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaat 452786  T
Q  280 ttgg 283  Q
    ||||    
T  452785 ttgg 452782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 28409802 - 28409970
Alignment:
Q  32 aagtgtggaaaagtcttggagatataagaatcatatggctcatc-aattttttagcaagattatgaggacaaataaaatgttggatgagtggataagaag 130  Q
    |||||||||||||||| | ||||| ||||||  | ||| ||| | || ||||||  |||||||||| |||  | ||||| |||||||| |||| ||||||    
T  28409802 aagtgtggaaaagtctcgaagatagaagaattgtgtggttcaccgaactttttaataagattatgaagac--agaaaatattggatgattggagaagaag 28409899  T
Q  131 tactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaat 202  Q
     |||||| ||| ||| |||| |||| |||||| |||||||||||||  ||||||||| | ||||||||||||    
T  28409900 cactttaattctaatatatatgaac-aagggggtatacaaaattgcacgaattatagagaaattaaactaat 28409970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 33251337 - 33251416
Alignment:
Q  189 ggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttac 268  Q
    ||||||||||| ||||||| | |||||||| ||||| ||| |||||||||| ||||||||| ||||| || |||||||||    
T  33251337 ggaattaaacttatgagtcatcccatgaagctatggaaaatggtgattgaacgaagactaaaaaaagtgattcgagttac 33251416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 268
Target Start/End: Complemental strand, 7789733 - 7789656
Alignment:
Q  191 aattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttac 268  Q
    ||||||||| ||||||| |||||| || |||||| |||| |||||||||  |||| ||| ||||||||||||||||||    
T  7789733 aattaaacttatgagtcataccattaaattatggaaaagagtgattgaacaaagattaacaaaagagactcgagttac 7789656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 14769368 - 14769421
Alignment:
Q  230 ggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    ||||||| |||| |||||||||||||||||| || |||| |||||| |||||||    
T  14769368 ggtgatttaatggagactaagaaaagagacttgatttactgataaccaatttgg 14769421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 79 - 283
Target Start/End: Original strand, 24177436 - 24177640
Alignment:
Q  79 tttttagcaagattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgctt 178  Q
    |||||| ||||||||||||||| || ||||||  | ||||||||| || ||| |||||| ||||||| ||||||||||| |||||||||||||||||| |    
T  24177436 tttttaacaagattatgaggacgaagaaaatgccgaatgagtggagaaaaagcactttaattccaatctataagaacaagggggatatacaaaattgcgt 24177535  T
Q  179 gaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaa 278  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||| ||    
T  24177536 gaattataggggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaa 24177635  T
Q  279 tttgg 283  Q
    |||||    
T  24177636 tttgg 24177640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 90 - 283
Target Start/End: Complemental strand, 2076833 - 2076640
Alignment:
Q  90 attatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggg 189  Q
    ||||||||||| || ||||||| ||| ||||||| |||||| |||||| ||||||| ||||||||||| ||||| ||||||||||||  |||||||||||    
T  2076833 attatgaggacgaagaaaatgtcggacgagtggagaagaagcactttaattccaatctataagaacaagggggacatacaaaattgcgcgaattataggg 2076734  T
Q  190 gaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    ||||||| |||| ||||| ||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||| |||||||    
T  2076733 gaattaagctaacgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttgg 2076640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 79 - 283
Target Start/End: Original strand, 20317903 - 20318107
Alignment:
Q  79 tttttagcaagattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgctt 178  Q
    |||||| | ||||||||||||| || ||||||| ||| ||||||| |||||| |||||| ||||||| ||||||||||| ||||||||||||||||||      
T  20317903 tttttaacgagattatgaggacgaagaaaatgtcggacgagtggagaagaagcactttaattccaatctataagaacaagggggatatacaaaattgcgc 20318002  T
Q  179 gaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaa 278  Q
     ||||||  ||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||| ||    
T  20318003 aaattattagggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacagataaccaa 20318102  T
Q  279 tttgg 283  Q
    |||||    
T  20318103 tttgg 20318107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 31 - 283
Target Start/End: Complemental strand, 1288947 - 1288694
Alignment:
Q  31 gaagtgtggaaaagtcttggagatataagaatcatatggctcatcaat-tttttagcaagattatgaggacaaataaaatgttggatgagtggataagaa 129  Q
    ||||||||||| |||||||| |||| | | ||  |||||||||  ||  |||||| | ||||||||||||| || ||||||| | | ||||||| |||||    
T  1288947 gaagtgtggaagagtcttggtgatagagggattgtatggctcacaaacctttttaacgagattatgaggacgaagaaaatgtcgaacgagtggagaagaa 1288848  T
Q  130 gtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaag 229  Q
    | |||||| ||||||| ||||||||||| |||||||||||||||||   ||||||||||||||||||  ||||||||| |||||||||| ||||||||||    
T  1288847 gcactttaattccaatctataagaacaagggggatatacaaaattgtgcgaattataggggaattaagttaatgagtcataccatgaagctatgggaaag 1288748  T
Q  230 ggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    |||||| ||| ||||||||||||| |||||||||||||| |||||| |||||||    
T  1288747 ggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttgg 1288694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 30 - 275
Target Start/End: Original strand, 26821 - 27067
Alignment:
Q  30 tgaagtgtggaaaagtcttggagatataagaatcatatggctcatcaat-tttttagcaagattatgaggacaaataaaatgttggatgagtggataaga 128  Q
    |||||||||||||||||||||||||| | ||||  | ||||||| |||  |||||| | |||||||||||||||| ||||||| ||||||||||| ||||    
T  26821 tgaagtgtggaaaagtcttggagatagaggaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgagtggaaaaga 26920  T
Q  129 agtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaa 228  Q
    |  |||||| |||   | ||||||||||| | ||||||||||||||| | ||||||||||||||||||| ||||||||| ||||||||||| |||| |      
T  26921 aacactttaattctgttctataagaacaaggaggatatacaaaattgttcgaattataggggaattaaattaatgagtcataccatgaagtcatggaagc 27020  T
Q  229 gggtgattgaatgaagactaagaaaagagactcgagttaccgataac 275  Q
    ||||||||||| ||| | |||||||| ||||| ||||||| ||||||    
T  27021 gggtgattgaacgaaaattaagaaaaaagacttgagttactgataac 27067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 22832161 - 22832091
Alignment:
Q  182 ttataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaa 252  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  22832161 ttataggggaattaagctaatgagtcataccatgaagttatgggaaaaagtgattgaatgaagactaagaa 22832091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 267
Target Start/End: Original strand, 37123591 - 37123672
Alignment:
Q  188 gggaattaaactaatgagtcttaccatgaagttatgggaaagg--gtgattgaatgaagactaagaaaagagactcgagtta 267  Q
    |||| ||||||| |||| || |||||||||||||||| |||    ||||||||||||||||||||||||||||||| |||||    
T  37123591 gggagttaaacttatgattcataccatgaagttatggaaaaaaaagtgattgaatgaagactaagaaaagagactcaagtta 37123672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 25937109 - 25937213
Alignment:
Q  180 aattataggggaattaaactaatgagtcttaccatgaagttatggg-aaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaa 278  Q
    |||||||||  ||||||||| |||| || ||||||||||||||||| ||||| | |||||  |||||||| |||| ||||||||| || | |||||| ||    
T  25937109 aattataggacaattaaacttatgattcataccatgaagttatgggaaaaggttaattgagcgaagactacgaaatgagactcgattttctgataaccaa 25937208  T
Q  279 tttgg 283  Q
    |||||    
T  25937209 tttgg 25937213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 756214 - 756129
Alignment:
Q  189 ggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataa 274  Q
    ||||||||||| | ||||| |||||  |||||||||||||| ||||||||  | |||| |||||||||||||| || || ||||||    
T  756214 ggaattaaacttaagagtcgtaccaacaagttatgggaaagagtgattgagcggagacaaagaaaagagactcaaggtaacgataa 756129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 88 - 283
Target Start/End: Original strand, 36650915 - 36651110
Alignment:
Q  88 agattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattatag 187  Q
    ||||||||||||| || ||||||  ||| ||||||| |||||  |||||| ||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  36650915 agattatgaggacgaagaaaatgccggacgagtggagaagaatcactttaattccaatctataagaacaagggggatatacaaaattgcgtgaattatag 36651014  T
Q  188 gggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    | ||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||| |||||||    
T  36651015 gagaattaagctaatgagtcataccatgaagttatgggaaagggtgattgaaagaagactaagaaaggagactcgagttacggataaccaatttgg 36651110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 79 - 283
Target Start/End: Original strand, 11592601 - 11592805
Alignment:
Q  79 tttttagcaagattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgctt 178  Q
    |||||| | ||| ||||||||| || ||||||  ||| ||||||| |||||| |||||| ||||||| ||||| ||||| ||||||||||||||||||      
T  11592601 tttttaacgagactatgaggacgaagaaaatgccggacgagtggagaagaagcactttaattccaatctataaaaacaagggggatatacaaaattgcgc 11592700  T
Q  179 gaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaa 278  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||| ||    
T  11592701 gaattataggggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaa 11592800  T
Q  279 tttgg 283  Q
    |||||    
T  11592801 tttgg 11592805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 79 - 283
Target Start/End: Complemental strand, 33351176 - 33350972
Alignment:
Q  79 tttttagcaagattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgctt 178  Q
    |||||| | ||||||| ||||| || ||||||| ||| ||||||| |||||| |||||| |||||||  |||||||||| ||||||||||||||||||      
T  33351176 tttttaacgagattataaggacgaagaaaatgtcggacgagtggagaagaagcactttaattccaatcgataagaacaagggggatatacaaaattgcgc 33351077  T
Q  179 gaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaa 278  Q
    |||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||  || ||||||||||||| ||||||| |||||| |||||| ||    
T  33351076 gaattataggggaattaagctaatgagtcataccatgaagttgtgggaaagggtgatcaaaagaagactaagaaaggagactctagttacggataaccaa 33350977  T
Q  279 tttgg 283  Q
    |||||    
T  33350976 tttgg 33350972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 31 - 283
Target Start/End: Original strand, 32629475 - 32629728
Alignment:
Q  31 gaagtgtggaaaagtcttggagatataagaatcatatggctcatcaatttttt-agcaagattatgaggacaaataaaatgttggatgagtggataagaa 129  Q
    |||||||||||||||||||| |||| | ||||  | |||||||  ||  |||| | | |||||||||  || || |||||| | || ||||||| |||||    
T  32629475 gaagtgtggaaaagtcttggcgatagaggaattgtgtggctcacaaaacttttcaacgagattatgaaaacgaagaaaatgcttgacgagtggagaagaa 32629574  T
Q  130 gtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaag 229  Q
    | || ||| ||||||| ||||||||||| |||||||||||| |||||  |||||| ||||||||||| |||||||||| |||||||||||||||||||||    
T  32629575 gcaccttaattccaatctataagaacaagggggatatacaacattgcgcgaattacaggggaattaagctaatgagtcataccatgaagttatgggaaag 32629674  T
Q  230 ggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    ||| |||||| |||||||||||||||||||||  ||||| |||||| |||||||    
T  32629675 ggtaattgaacgaagactaagaaaagagactcacgttacggataaccaatttgg 32629728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 88 - 283
Target Start/End: Complemental strand, 24178556 - 24178361
Alignment:
Q  88 agattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattatag 187  Q
    ||||||||||||| || |||||||  || ||||||| || ||| || ||  ||||||| ||||| ||||| ||  ||||||| |||||| ||||||||||    
T  24178556 agattatgaggacgaagaaaatgtcagaggagtggagaataagcaccttcattccaatctataataacaagggatatatacagaattgcgtgaattatag 24178457  T
Q  188 gggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    ||||||| | |||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||| |||||| |||||||    
T  24178456 gggaatttagctaatgagtcataccatgaagttatgggaaagggtgattcaacgaagactaagaaaagagactcaagttacggataacaaatttgg 24178361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 38896612 - 38896730
Alignment:
Q  162 gatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactc 261  Q
    |||||| ||||||||   ||||||||||||||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||||||||| |||||||    
T  38896612 gatatataaaattgcgcaaattataggggaattaagctaatgagtcataccatgaagttatggaaaagggtgatcgaaagaagactaagaaaggagactc 38896711  T
Q  262 gagttaccgataactaatt 280  Q
    ||||||| |||||| ||||    
T  38896712 gagttacggataaccaatt 38896730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 182 - 283
Target Start/End: Complemental strand, 39907646 - 39907545
Alignment:
Q  182 ttataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaattt 281  Q
    |||| |||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||||| |||||| |||||    
T  39907646 ttattggggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagacccgagttacggataaccaattt 39907547  T
Q  282 gg 283  Q
    ||    
T  39907546 gg 39907545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 281
Target Start/End: Complemental strand, 17101887 - 17101752
Alignment:
Q  144 atttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaa 243  Q
    ||||||||||||||  |||||||||||||||| || |||||||||||||| ||||| | ||| |   |||||||||| |  |||| | | ||||||||||    
T  17101887 atttataagaacaagtgggatatacaaaattg-ttcaattataggggaatgaaacttaagagccaatccatgaagttgtaagaaa-gattattgaatgaa 17101790  T
Q  244 gactaagaaaagagactcgagttaccgataactaattt 281  Q
    || | |||||||||||| ||||||  |||||| |||||    
T  17101789 gagtgagaaaagagactagagttattgataaccaattt 17101752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 46357069 - 46357003
Alignment:
Q  217 agttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    ||||||||||||||||||| ||| |||||| || ||| |||||||||||||| |||||  |||||||    
T  46357069 agttatgggaaagggtgatcgaaagaagaccaaaaaaggagactcgagttacggataatcaatttgg 46357003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 33738646 - 33738551
Alignment:
Q  132 actttatttccaatttataagaac--aaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatggg 225  Q
    |||||| ||| ||| |||||||||  ||||||||| |||||||||||   || |||| || ||||||||| ||||||| ||| |||||||||||||    
T  33738646 actttaattctaatctataagaactaaaaggggatttacaaaattgcgcaaaatataaggaaattaaacttatgagtcatactatgaagttatggg 33738551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 20499102 - 20499196
Alignment:
Q  160 gggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaa 254  Q
    ||||||||||||||||    ||||||||||  |||||||| ||  | | ||| ||| |||||| |||||| ||||||||||| ||||||||||||    
T  20499102 gggatatacaaaattgtgcaaattatagggtgattaaacttataggacctactatgtagttataggaaagagtgattgaatggagactaagaaaa 20499196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 22346576 - 22346628
Alignment:
Q  231 gtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    ||||| ||| ||||||||||||| |||||||||||| | |||||| |||||||    
T  22346576 gtgatcgaaagaagactaagaaaggagactcgagtttcggataaccaatttgg 22346628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 9e-61; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 79 - 281
Target Start/End: Original strand, 6082301 - 6082503
Alignment:
Q  79 tttttagcaagattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgctt 178  Q
    |||||| | ||||||||||||| || ||||||| ||| ||||||| |||||| |||||| ||||||| ||||||||||| ||| ||||||||||||||      
T  6082301 tttttaacgagattatgaggacgaagaaaatgtcggacgagtggagaagaagcactttaattccaatctataagaacaaggggcatatacaaaattgcgc 6082400  T
Q  179 gaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaa 278  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||| ||    
T  6082401 gaattataggggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaa 6082500  T
Q  279 ttt 281  Q
    |||    
T  6082501 ttt 6082503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 31 - 283
Target Start/End: Complemental strand, 5260667 - 5260414
Alignment:
Q  31 gaagtgtggaaaagtcttggagatataagaatcatatggctcatcaatttttt-agcaagattatgaggacaaataaaatgttggatgagtggataagaa 129  Q
    |||||||||||||||||||| |||| | ||||  | |||||||  ||  |||| | | |||||||||||||||| ||||||  ||| ||||||| |||||    
T  5260667 gaagtgtggaaaagtcttggcgatagaggaattgtgtggctcacaaaacttttcaacgagattatgaggacaaagaaaatgccggacgagtggagaagaa 5260568  T
Q  130 gtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaag 229  Q
      || ||| ||||||| ||||||||||| |||||||||||| | |||  |||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  5260567 tcaccttaattccaatctataagaacaagggggatatacaacaatgcgcgaattataggggaattaagctaatgagtcataccatgaagttatgggaaag 5260468  T
Q  230 ggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    ||| |||||  ||||||| |||||||||||||  ||||| |||||| |||||||    
T  5260467 ggtaattgagcgaagacttagaaaagagactcacgttacggataaccaatttgg 5260414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 88 - 261
Target Start/End: Complemental strand, 20428998 - 20428825
Alignment:
Q  88 agattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattatag 187  Q
    ||||||||||||| || ||||||   || || || | |||||| || ||| ||||||| ||||||||||| |||||||||||| |||||  ||||||||     
T  20428998 agattatgaggacgaagaaaatgccagacgaatgaagaagaagcaccttaattccaatatataagaacaagggggatatacaacattgcgcgaattataa 20428899  T
Q  188 gggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactc 261  Q
    ||||||||| |||||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||||||||    
T  20428898 gggaattaagctaatgagtcataccatgaagttatgggaaagggtaattgaacgaagactaagaacagagactc 20428825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 30669888 - 30670011
Alignment:
Q  160 gggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagac 259  Q
    ||||||||||||| |||   ||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||| |||||    
T  30669888 gggatatacaaaaatgcgcaaattataggggaattaagctaatgagtcataccatgaagttatggcaaaggatgattgaacgaagactaagaaatgagac 30669987  T
Q  260 tcgagttaccgataactaatttgg 283  Q
    || |||||| |||||| |||||||    
T  30669988 tcaagttacggataaccaatttgg 30670011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 79 - 267
Target Start/End: Original strand, 26290696 - 26290884
Alignment:
Q  79 tttttagcaagattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgctt 178  Q
    |||||| | |||||||||||||||  ||||||  ||||||||||| | |||  |||||| || | ||  |||||||||| |||||||||||||||||       
T  26290696 tttttaacgagattatgaggacaatgaaaatgcaggatgagtggagatgaaacactttaattacgatccataagaacaagggggatatacaaaattgtgc 26290795  T
Q  179 gaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagtta 267  Q
    |||| ||||||||||||| || ||||||| |||||| ||||||    |||| ||||||||| ||||||||| ||||||| ||| |||||    
T  26290796 gaatgataggggaattaaccttatgagtcataccataaagttaataaaaagagtgattgaacgaagactaaaaaaagagtctcaagtta 26290884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 196
Target Start/End: Original strand, 9705661 - 9705827
Alignment:
Q  31 gaagtgtggaaaagtcttggagatataagaatcatatggctcatcaatttttt-agcaagattatgaggacaaataaaatgttggatgagtggataagaa 129  Q
    |||||||||||||||||||| |||| | ||||  | |||||||  ||  |||| | | |||||||||| || || |||||||  || ||||||| |||||    
T  9705661 gaagtgtggaaaagtcttggcgatagaggaattgtgtggctcacaaaacttttcaacgagattatgagaacgaagaaaatgtccgacgagtggagaagaa 9705760  T
Q  130 gtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggggaattaa 196  Q
    | || ||| ||||||| ||||||||||| |||||||||||| |||||  ||||||||||||||||||    
T  9705761 gcaccttaattccaatctataagaacaagggggatatacaacattgcgcgaattataggggaattaa 9705827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 274
Target Start/End: Original strand, 3629249 - 3629373
Alignment:
Q  150 aagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaa 249  Q
    ||||| || ||||||||||||||||||   ||||||||||||||||||   ||||||| ||||| || ||||||| || ||| || | |||  | | |||    
T  3629249 aagaataagggggatatacaaaattgcaaaaattataggggaattaaatgtatgagtcataccacgatgttatggaaaggggcgactaaattgaaattaa 3629348  T
Q  250 gaaaagagactcgagttaccgataa 274  Q
    ||||||||||||||||||| |||||    
T  3629349 gaaaagagactcgagttacggataa 3629373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 30243773 - 30243851
Alignment:
Q  180 aattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagac 259  Q
    |||| ||| |||||| |||| ||||||| | |||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  30243773 aattttagaggaattcaacttatgagtcatcccatgaagttatgg-aaatggtgattaaatgaagactaagaaaagagac 30243851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 2681669 - 2681621
Alignment:
Q  216 aagttatgggaaagggtgattgaatgaagactaagaaaagagactcgag 264  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||||||||    
T  2681669 aagttacgggaaagggtgattgaaggaagattaagaaaagagactcgag 2681621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 9369673 - 9369590
Alignment:
Q  167 acaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaa 252  Q
    |||||||||||| |||||||||||  ||||||| || |||| | | |||||||| || ||||| ||||||||||| ||||||||||    
T  9369673 acaaaattgcttaaattatagggg--ttaaacttataagtcatgctatgaagttgtgcgaaagagtgattgaatgtagactaagaa 9369590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 31 - 283
Target Start/End: Complemental strand, 23907721 - 23907468
Alignment:
Q  31 gaagtgtggaaaagtcttggagatataagaatcatatggctcatcaat-tttttagcaagattatgaggacaaataaaatgttggatgagtggataagaa 129  Q
    ||||||||||| |||||||| |||| | | ||  | ||||||| |||  |||||| | ||||||||||||| || |||||| |||| ||||||| |||||    
T  23907721 gaagtgtggaagagtcttggcgatagagggattgtgtggctcaccaacctttttaacgagattatgaggacgaagaaaatgctggacgagtggagaagaa 23907622  T
Q  130 gtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaag 229  Q
    | |||||| ||||||||||||||||||| |||||||||||||||| |  |||||||||||||||||| |||||||||| |||||| ||||||||||||||    
T  23907621 gcactttaattccaatttataagaacaagggggatatacaaaattccgcgaattataggggaattaagctaatgagtcataccataaagttatgggaaag 23907522  T
Q  230 ggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    |||||| ||| ||||||||||||| |||||||||||||| |||||  |||||||    
T  23907521 ggtgatcgaaagaagactaagaaaggagactcgagttacggataatcaatttgg 23907468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 88 - 283
Target Start/End: Complemental strand, 48623888 - 48623693
Alignment:
Q  88 agattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattatag 187  Q
    ||||||||||||  || ||||||| | ||||||||| || ||| |||||| ||||||| ||||||||||| ||||||||||||||||||  |||||||||    
T  48623888 agattatgaggattaagaaaatgtcgtatgagtggagaataagcactttaattccaatctataagaacaagggggatatacaaaattgcgcgaattatag 48623789  T
Q  188 gggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||  ||||||||||||| |||||| |||||||    
T  48623788 gggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaagaagactcgagttacagataaccaatttgg 48623693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 146 - 283
Target Start/End: Complemental strand, 27451476 - 27451339
Alignment:
Q  146 ttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaaga 245  Q
    |||||||||||||||||||||||| ||||||  |||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||  |||||    
T  27451476 ttataagaacaaaggggatatacataattgcgcgaattataggggaattaagctaatgagtcataccatgaagttatgggaaagggtaattgagcgaaga 27451377  T
Q  246 ctaagaaaagagactcgagttaccgataactaatttgg 283  Q
    ||||||||||||||||  ||||| ||||||| ||||||    
T  27451376 ctaagaaaagagactcatgttacggataacttatttgg 27451339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 31 - 274
Target Start/End: Complemental strand, 16001359 - 16001117
Alignment:
Q  31 gaagtgtggaaaagtcttggagatataagaatcatatggctcatcaat-tttttagcaagattatgaggacaaataaaatgttggatgagtggataagaa 129  Q
    |||||||||||||||||||||||||   ||||  | ||| ||| |||  |||||| | ||||||||||||| || |||||   ||| ||||||| |||      
T  16001359 gaagtgtggaaaagtcttggagatag--gaattgtgtgggtcaccaaactttttaacgagattatgaggacgaagaaaataccggacgagtggagaagct 16001262  T
Q  130 gtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaact-aatgagtcttaccatgaagttatgggaaa 228  Q
    | |||||| |||| || ||||||||||| | | ||||||| |||||| ||||||||||| |||||||| | |||||||| ||| ||||||||||||||||    
T  16001261 gcactttaattcccatctataagaacaatgtg-atatacataattgcgtgaattataggagaattaaaattaatgagtcatactatgaagttatgggaaa 16001163  T
Q  229 gggtgattgaatgaagactaagaaaagagactcgagttaccgataa 274  Q
    |||||||| || |||||||||||||||| ||||||| ||| |||||    
T  16001162 gggtgatttaacgaagactaagaaaagaaactcgagctacggataa 16001117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 1778287 - 1778184
Alignment:
Q  179 gaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaa 278  Q
    |||||||||| ||||||| |||||||||| ||||||| | ||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||| ||    
T  1778287 gaattataggagaattaagctaatgagtcataccatggaattatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaa 1778188  T
Q  279 tttg 282  Q
    ||||    
T  1778187 tttg 1778184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 267
Target Start/End: Original strand, 56224684 - 56224863
Alignment:
Q  88 agattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattatag 187  Q
    ||||||||| |||||| |||||||  |||||||| | ||||||| ||||  ||| ||| |||||||| || | |||||||||||||||  | ||||||||    
T  56224684 agattatgaagacaaagaaaatgtcagatgagtgcagaagaagttctttgattctaatctataagaataaggaggatatacaaaattgtgtaaattatag 56224783  T
Q  188 gggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagtta 267  Q
     ||||||||||||||||||| |  ||||||||| ||||||| ||| |||||    |||||||| | ||||||||||||||    
T  56224784 aggaattaaactaatgagtcatgtcatgaagttgtgggaaatggtaattgagattagactaaggacagagactcgagtta 56224863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 202 - 283
Target Start/End: Original strand, 435267 - 435348
Alignment:
Q  202 tgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||| |||||| |||||||    
T  435267 tgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggaggctcgagttacggataaccaatttgg 435348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 39707477 - 39707579
Alignment:
Q  180 aattataggggaattaaactaatgagtcttaccatgaagttat-gggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaa 278  Q
    |||||||| ||||||||||||||||||| |||||||||||||| || ||| |||||||||| |||||||||||||||| | |||| ||||  ||||| ||    
T  39707477 aattatagaggaattaaactaatgagtcataccatgaagttataggaaaaaggtgattgaacgaagactaagaaaagaaagtcgatttacgaataaccaa 39707576  T
Q  279 ttt 281  Q
    |||    
T  39707577 ttt 39707579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 53703655 - 53703717
Alignment:
Q  213 atgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataac 275  Q
    ||||||||||||||||||||||| ||| ||||||||||||| |||||||| ||||| ||||||    
T  53703655 atgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgggttacagataac 53703717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 55769641 - 55769560
Alignment:
Q  180 aattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactc 261  Q
    ||||||| || ||||||||| ||||||| ||||||||| ||||| |||||| |||| ||||  ||||||||||||| |||||    
T  55769641 aattataaggaaattaaacttatgagtcataccatgaaattatgagaaaggctgatagaatagagactaagaaaagtgactc 55769560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 261
Target Start/End: Complemental strand, 55833897 - 55833816
Alignment:
Q  180 aattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactc 261  Q
    ||||||| || ||||||||| ||||||| ||||||||| ||||| |||||| |||| ||||  ||||||||||||| |||||    
T  55833897 aattataaggaaattaaacttatgagtcataccatgaaattatgagaaaggctgatagaatagagactaagaaaagtgactc 55833816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 79 - 283
Target Start/End: Complemental strand, 51442134 - 51441930
Alignment:
Q  79 tttttagcaagattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgctt 178  Q
    |||||| | ||||||||||||| || ||||||| ||| ||||||| |||||| |||||| ||||||| ||||||||||| |||||||||||||||  |      
T  51442134 tttttaacgagattatgaggacgaagaaaatgtcggacgagtggagaagaagcactttaattccaatctataagaacaagggggatatacaaaatcacgc 51442035  T
Q  179 gaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaa 278  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||| ||    
T  51442034 gaattataggggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaa 51441935  T
Q  279 tttgg 283  Q
    |||||    
T  51441934 tttgg 51441930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 79 - 283
Target Start/End: Complemental strand, 49348771 - 49348568
Alignment:
Q  79 tttttagcaagattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgctt 178  Q
    |||||| | ||||||||||||| || ||||||| ||| ||||||| |||||| |||||| ||||||| ||||||||||| |||| |||||||||||||      
T  49348771 tttttaacgagattatgaggacgaagaaaatgtcggacgagtggagaagaagcactttaattccaatctataagaacaaggggg-tatacaaaattgcgc 49348673  T
Q  179 gaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaa 278  Q
    |||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||| ||| |||||||||||||  ||||||||||||  |||||| ||    
T  49348672 gaattataggagaattaagctaatgagtcataccatgaagtcatgggaaagggtgatcgaaagaagactaagaaagaagactcgagttatggataaccaa 49348573  T
Q  279 tttgg 283  Q
    |||||    
T  49348572 tttgg 49348568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 132 - 283
Target Start/End: Original strand, 8670883 - 8671034
Alignment:
Q  132 actttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaaggg 231  Q
    |||||| ||||||||||||||||||| |||||||||||||| |||  |||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  8670883 actttaattccaatttataagaacaagggggatatacaaaactgcgcgaattataggggaattaagctaatgagtcataccatgaagttatgggaaaggg 8670982  T
Q  232 tgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    |||| ||| ||| ||||||||| ||| |||||||||| |||||  |||||||    
T  8670983 tgatggaaagaaaactaagaaaggagcctcgagttacggataaaaaatttgg 8671034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 153 - 283
Target Start/End: Complemental strand, 43241677 - 43241547
Alignment:
Q  153 aacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaa 252  Q
    ||||| |||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  43241677 aacaagggggatatacaaaattgcgtgaattataagggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaa 43241578  T
Q  253 aagagactcgagttaccgataactaatttgg 283  Q
    | ||||||| |||||| |||||| |||||||    
T  43241577 aggagactcaagttacggataaccaatttgg 43241547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 117 - 283
Target Start/End: Complemental strand, 29173863 - 29173695
Alignment:
Q  117 gagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattata--ggggaattaaactaatgagtcttaccat 214  Q
    ||||||| |||||| |||||| || |||| |||||||||||   |||||||| ||||||| |||||||||  ||||||||||||||||||||| ||| ||    
T  29173863 gagtggagaagaagcactttaatttcaatctataagaacaagaaggatatacgaaattgcgtgaattatataggggaattaaactaatgagtcgtacaat 29173764  T
Q  215 gaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
     |||||||| |||||| |||||||| ||| |||||||||||||||||||||||| ||||||||||||||    
T  29173763 caagttatgcgaaaggatgattgaacgaaaactaagaaaagagactcgagttacggataactaatttgg 29173695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 90 - 283
Target Start/End: Complemental strand, 32405818 - 32405627
Alignment:
Q  90 attatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggg 189  Q
    |||| ||||||||| ||||||||||||||||||| |||||  |||||| |||  || ||| ||||||| || ||||||||||||||    ||||||||||    
T  32405818 attacgaggacaaagaaaatgttggatgagtggagaagaaacactttaattctgatctattagaacaa-ggcgatatacaaaattgtgcaaattataggg 32405720  T
Q  190 gaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
     |||||| || ||||||| |||||||||||||||||||| |||||||||  | |||||||||||| ||| |||||||||| ||||  |||||||    
T  32405719 aaattaaccttatgagtcataccatgaagttatgggaaaaggtgattgagcggagactaagaaaa-agattcgagttaccaataatcaatttgg 32405627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 11681832 - 11681928
Alignment:
Q  178 tgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataa 274  Q
    ||||||||||||||||||| |||| ||||| |||||| || ||||||||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  11681832 tgaattataggggaattaagctaaagagtcataccatcaaattatgggaaagggtgattgagcgaagactaagaaaagagacttgagttaccgataa 11681928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 29 - 281
Target Start/End: Complemental strand, 35829810 - 35829559
Alignment:
Q  29 ttgaagtgtggaaaagtcttggagatataagaatcatatggctcatcaa-ttttttagcaagattatgaggacaaataaaatgttggatgagtggataag 127  Q
    |||||||||||||||||||||||| || | | ||    ||||||| ||| ||||||| | | |||||||||||| | ||||||    ||||||||| |||    
T  35829810 ttgaagtgtggaaaagtcttggagttaaaggcatttagtggctcaccaaattttttaacgaaattatgaggacatagaaaatgccaaatgagtggagaag 35829711  T
Q  128 aagtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaa 227  Q
    ||| |||||| |||| || |||||||||||   ||||||| |||||||    |||||||| ||| |||||||  |||||| ||||| |||||||||||||    
T  35829710 aagcactttaattccgatctataagaacaagatggatataaaaaattgtgcaaattatagaggagttaaact--tgagtcataccaagaagttatgggaa 35829613  T
Q  228 agggtgattgaatgaagactaagaaaagagactcgagttaccgataactaattt 281  Q
    || ||||||||| | ||| |||||||| | |||||||||||  ||||| |||||    
T  35829612 agagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaattt 35829559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 34828321 - 34828267
Alignment:
Q  213 atgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagtta 267  Q
    |||||||||||||||||| |||||||  |||||| ||| ||||||||| ||||||    
T  34828321 atgaagttatgggaaaggatgattgagagaagaccaaggaaagagacttgagtta 34828267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 88 - 283
Target Start/End: Original strand, 36544073 - 36544268
Alignment:
Q  88 agattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattatag 187  Q
    ||||||||||||| || ||||||| ||| ||||||| |||||| |||||| ||||||| ||||||||||| ||||||||||||||||||  |||| ||||    
T  36544073 agattatgaggacgaagaaaatgtcggacgagtggagaagaagcactttaattccaatctataagaacaagggggatatacaaaattgcgcgaatcatag 36544172  T
Q  188 gggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||| |||||| |||||||    
T  36544173 gggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcaagttacggataaccaatttgg 36544268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 88 - 267
Target Start/End: Complemental strand, 15216630 - 15216451
Alignment:
Q  88 agattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattatag 187  Q
    ||||||||||||| || ||||||   || ||||||| |||||| || ||| ||||||| ||||||||||| | |||||||||| |||||  |||||||||    
T  15216630 agattatgaggacgaagaaaatgccagacgagtggagaagaagcaccttaattccaatctataagaacaaggtggatatacaacattgcacgaattatag 15216531  T
Q  188 gggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagtta 267  Q
    ||||||||| |||||||||| ||||||||||||||| |||||||| |||||  ||||||||||||||||||||| |||||    
T  15216530 gggaattaagctaatgagtcataccatgaagttatgcgaaagggtaattgagcgaagactaagaaaagagactcaagtta 15216451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 79 - 260
Target Start/End: Original strand, 13588619 - 13588800
Alignment:
Q  79 tttttagcaagattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgctt 178  Q
    |||||| ||||||||| |||||||| || ||||  |||||||||| |||||  |||||| |||  ||||||||||||||   |||| ||||||| ||  |    
T  13588619 tttttaacaagattataaggacaaagaagatgtcagatgagtggaaaagaaacactttaattctgatttataagaacaagaaggatgtacaaaactgtgt 13588718  T
Q  179 gaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagact 260  Q
     ||||||| | |||||||||||||||||| |||||| |||||| |||||| | |||||||  ||| ||||||||||||||||    
T  13588719 aaattataagtgaattaaactaatgagtcataccataaagttaagggaaatgatgattgagcgaaaactaagaaaagagact 13588800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 193 - 283
Target Start/End: Complemental strand, 42855271 - 42855181
Alignment:
Q  193 ttaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    |||| |||||||||| ||||||||||||||||||||||   |||||  |||||||||||||||||||||| ||||| |||||| |||||||    
T  42855271 ttaagctaatgagtcataccatgaagttatgggaaaggaaaattgagcgaagactaagaaaagagactcgcgttacggataaccaatttgg 42855181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 41148467 - 41148544
Alignment:
Q  144 atttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttat 222  Q
    ||||||||||| ||||||||||||||||||||| |  || ||||||| |||||||| ||||||| |||||  |||||||    
T  41148467 atttataagaa-aaaggggatatacaaaattgcgtatatgatagggggattaaacttatgagtcataccacaaagttat 41148544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 256
Target Start/End: Complemental strand, 33667224 - 33667048
Alignment:
Q  79 tttttagcaagattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgctt 178  Q
    |||||| ||||||||||||| |||| |||||||||  |||| ||| |||||  |||||| ||   ||||||||||| || || ||||||||| ||| |      
T  33667224 tttttaacaagattatgaggtcaaagaaaatgttgagtgagaggagaagaatcactttaattatgatttataagaaaaagggagatatacaagatttcgc 33667125  T
Q  179 gaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaaga 256  Q
     ||||||||||| ||||||||  | |||| |||| ||||||| ||  |||| ||||||||  | ||| ||||||||||    
T  33667124 aaattatagggg-attaaacttgtaagtcataccgtgaagttgtgaaaaagagtgattgagcggagattaagaaaaga 33667048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 248
Target Start/End: Original strand, 31977595 - 31977697
Alignment:
Q  146 ttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaaga 245  Q
    |||||||||||||| |||||||||||||||    |||||||  ||||||||| | || |||| | |||| |||||||||  ||| ||||||||| | |||    
T  31977595 ttataagaacaaagaggatatacaaaattgtgcaaattataaaggaattaaaattattagtcatgccataaagttatggacaagagtgattgaacggaga 31977694  T
Q  246 cta 248  Q
    |||    
T  31977695 cta 31977697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 283
Target Start/End: Complemental strand, 41445465 - 41445408
Alignment:
Q  226 aaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    |||| |||||| |||| |||||||||||||| ||||||||||| | |||| |||||||    
T  41445465 aaagagtgattaaatggagactaagaaaagacactcgagttacggctaaccaatttgg 41445408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 11131206 - 11131142
Alignment:
Q  192 attaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaaga 256  Q
    ||||||||  |||||  ||||||||| ||||| ||||  ||||||||||||||||| ||||||||    
T  11131206 attaaacttttgagttataccatgaaattatgagaaatagtgattgaatgaagactgagaaaaga 11131142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 79 - 281
Target Start/End: Original strand, 38849014 - 38849216
Alignment:
Q  79 tttttagcaagattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgctt 178  Q
    |||||| | ||||||| ||||| || ||||| | ||| ||||||| |||||  |||||| ||||||| ||||||||||| ||||||||||||||||||      
T  38849014 tttttaacgagattataaggacgaagaaaatatcggacgagtggagaagaaacactttaattccaatctataagaacaagggggatatacaaaattgcgc 38849113  T
Q  179 gaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaa 278  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| ||||| |||||||||    
T  38849114 gaattataagggaattaaactaatgagtcataccatgaagttatgggaaagagtgattgaacgaaggctaagaaaagagactcgggttacagataactaa 38849213  T
Q  279 ttt 281  Q
    |||    
T  38849214 ttt 38849216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 88 - 283
Target Start/End: Complemental strand, 51449070 - 51448875
Alignment:
Q  88 agattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattatag 187  Q
    ||||||||||||| || ||||||  ||| ||||||| |||||  |||||| ||||||| |||||||||||  |||||||||||||||||  |||||||||    
T  51449070 agattatgaggacgaagaaaatgccggacgagtggagaagaaacactttaattccaatctataagaacaagagggatatacaaaattgcgcgaattatag 51448971  T
Q  188 gggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    ||||||||| |||||||||| |||||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||| |||||||    
T  51448970 gggaattaagctaatgagtcataccataaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttgg 51448875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 88 - 281
Target Start/End: Original strand, 3368684 - 3368877
Alignment:
Q  88 agattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattatag 187  Q
    ||||||| |||||||| ||||| |||||||| |||| |||||| | |||| |||| ||||||||||||||   |||||||||||||||  ||||||||||    
T  3368684 agattataaggacaaagaaaatattggatgaatggagaagaagcattttagttccgatttataagaacaagatggatatacaaaattgtgtgaattatag 3368783  T
Q  188 gggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaattt 281  Q
      |||||||||| || | || ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||  |||| ||||||    
T  3368784 aagaattaaacttataattcataccatgaagttatgggaaaatgtgattgaacgaagactaagaaaagagactcgagttacttataattaattt 3368877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 163 - 283
Target Start/End: Original strand, 52137824 - 52137944
Alignment:
Q  163 atatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcg 262  Q
    |||||||||||||   |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||| |||| |||    
T  52137824 atatacaaaattgtgcgaattataggggaattaagctaatgagtcataccatgaagttatgggaaagggtgatcgaaagaagactcagaaaggagattcg 52137923  T
Q  263 agttaccgataactaatttgg 283  Q
    |||||| |||||| |||||||    
T  52137924 agttacggataaccaatttgg 52137944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 169 - 283
Target Start/End: Original strand, 27916580 - 27916694
Alignment:
Q  169 aaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttac 268  Q
    |||||||| ||||||||||||||  |||| | ||||||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||||| | |||||     
T  27916580 aaaattgcgtgaattataggggatataaattgatgagtcataccatgaagttatgagaaagggtgattgaacgaagaataagaaaagagacccaagttag 27916679  T
Q  269 cgataactaatttgg 283  Q
     |||||| |||||||    
T  27916680 tgataaccaatttgg 27916694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 48220802 - 48220895
Alignment:
Q  189 ggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttg 282  Q
    ||||||||||| |||| || || ||||||||||||  | || |||||| ||  || | |||||||||||||||||||||  |||||||||||||    
T  48220802 ggaattaaacttatgaatcatatcatgaagttatgatagagagtgattaaacaaacattaagaaaagagactcgagttagagataactaatttg 48220895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 77 - 283
Target Start/End: Complemental strand, 13629 - 13424
Alignment:
Q  77 attttttagcaagattatgaggacaaataaaatgttggatgagtggataagaagtactttatttccaatttataagaacaaaggggatatacaaaattgc 176  Q
    |||||||| | ||||||||||||| || ||||||| ||| ||||||| || ||  |||||| ||||||| ||||||||||| ||| |||||||||| | |    
T  13629 attttttaacgagattatgaggacgaagaaaatgtcggacgagtggagaacaaacactttaattccaatctataagaacaa-gggaatatacaaaactac 13531  T
Q  177 ttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataact 276  Q
      |||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| ||||||||||| |  |||||| |||||| ||||||     
T  13530 gcgaattataggggaattaagctaatgagtcataccatgaagttatgggaaatggtgattgaacgaagactaagagagaagactccagttacggataacc 13431  T
Q  277 aatttgg 283  Q
    |||||||    
T  13430 aatttgg 13424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 126 - 247
Target Start/End: Original strand, 52130 - 52251
Alignment:
Q  126 agaagtactttatttccaatttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatggg 225  Q
    ||||||||| || ||||||| |||| |||||| ||| ||||||| |||||| | |||||||| ||||||||  ||||||||  |||| |||||||||| |    
T  52130 agaagtactctaattccaatctatatgaacaaggggaatatacagaattgcgtaaattatagaggaattaagttaatgagttataccgtgaagttatgag 52229  T
Q  226 aaagggtgattgaatgaagact 247  Q
    |||||||||||||| |||||||    
T  52230 aaagggtgattgaacgaagact 52251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 30520 - 30584
Alignment:
Q  219 ttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttaccgataactaatttgg 283  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||| |||||||    
T  30520 ttatgggaaagggtgattgaaagaagactaagaaaggagactcgagttacggataaccaatttgg 30584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 25476 - 25392
Alignment:
Q  182 ttataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagtt 266  Q
    ||||||| ||||||| || || |||| | |||||||||||| || |||| ||||| |||| | ||||| ||||||||||||||||    
T  25476 ttataggagaattaagcttattagtcatgccatgaagttataggcaaggatgattaaatggatactaataaaagagactcgagtt 25392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 90297 - 90257
Alignment:
Q  242 aagactaagaaaagagactcgagttaccgataactaatttg 282  Q
    ||||||||||||||||||||||||||| |||||| ||||||    
T  90297 aagactaagaaaagagactcgagttacggataaccaatttg 90257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 248
Target Start/End: Complemental strand, 20608 - 20506
Alignment:
Q  146 ttataagaacaaaggggatatacaaaattgcttgaattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaaga 245  Q
    |||||||||||||| |||||||||||||||    |||||||  ||||||||| | || |||| | |||| |||||||||  ||| ||||||||| | |||    
T  20608 ttataagaacaaagaggatatacaaaattgtgcaaattataaaggaattaaaattattagtcatgccataaagttatggacaagagtgattgaacggaga 20509  T
Q  246 cta 248  Q
    |||    
T  20508 cta 20506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 8706 - 8784
Alignment:
Q  180 aattataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagact 260  Q
    |||||||||||| ||||||| || || | |||||| |||||||||| ||| |||||||||  |||||||||| ||||||||    
T  8706 aattatagggga-ttaaacttattaggcataccataaagttatggg-aagagtgattgaacaaagactaagataagagact 8784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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