View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21542_high_12 (Length: 290)
Name: NF21542_high_12
Description: NF21542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21542_high_12 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 26 - 273
Target Start/End: Original strand, 33410339 - 33410586
Alignment:
| Q |
26 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcagaa |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33410339 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33410438 |
T |
|
| Q |
126 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410439 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
33410538 |
T |
|
| Q |
226 |
tgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttg |
273 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410539 |
tgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttg |
33410586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 26 - 273
Target Start/End: Original strand, 33424241 - 33424488
Alignment:
| Q |
26 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcagaa |
125 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33424241 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33424340 |
T |
|
| Q |
126 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33424341 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
33424440 |
T |
|
| Q |
226 |
tgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttg |
273 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33424441 |
tgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttg |
33424488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 26 - 273
Target Start/End: Original strand, 33416188 - 33416435
Alignment:
| Q |
26 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcagaa |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33416188 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaa |
33416287 |
T |
|
| Q |
126 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
225 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
33416288 |
cagtgatcagcaactccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaag |
33416387 |
T |
|
| Q |
226 |
tgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttg |
273 |
Q |
| |
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||||||| || |||||||||||||| ||||| |||||||||||||||| |
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| T |
33416388 |
tgcagctctggaagagtgtgccattcactttaaaaacattgtgccttg |
33416435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 26 - 259
Target Start/End: Original strand, 33436393 - 33436626
Alignment:
| Q |
26 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcagaa |
125 |
Q |
| |
|
|||||| |||| ||||||||||| |||||| || || || |||||||||||||| ||||| ||||||||||||||||| || ||||||||| |||||||| |
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| T |
33436393 |
agatgatacaatagagtgagcattagaagatggaggaggggaaggagcaggtgcgccttctgctagaacagtgatgacaaatttcatttgatgagcagaa |
33436492 |
T |
|
| Q |
126 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
225 |
Q |
| |
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|| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
33436493 |
caatgatcagctacgccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcccgtagagagtgcttcattttttggtggaaaag |
33436592 |
T |
|
| Q |
226 |
tgcagctttgaaagagtgtgccatttactttgaa |
259 |
Q |
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||||| | ||| ||||| ||||| |||||||| |
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| T |
33436593 |
tgcagtccttaaaaagtgtaccattcactttgaa |
33436626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 23 - 273
Target Start/End: Complemental strand, 33428351 - 33428101
Alignment:
| Q |
23 |
cacagatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagca |
122 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||||| |||||||| ||||||||| |
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| T |
33428351 |
cacagatgaaacaacagaatgagcatcagaagaaggtggaagagaaggagcaggggcactttctgctagaacagtgatgatgaacttcatgtgacgagca |
33428252 |
T |
|
| Q |
123 |
gaacagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaa |
222 |
Q |
| |
|
||||||| |||||| | |||||||||||||||||| || |||| || ||||| |||| ||||||||||| |||||||||||||| |||| |||||||| |
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| T |
33428251 |
gaacagttatcagctatgccacaaacataccactttgtttcttcagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaa |
33428152 |
T |
|
| Q |
223 |
aagtgcagctttgaaagagtgtgccatttactttgaaaacattgtgccttg |
273 |
Q |
| |
|
||||||| || ||||||| |||||| || ||||||||||||||||| |||| |
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| T |
33428151 |
aagtgcatctctgaaagaatgtgccgttcactttgaaaacattgtgtcttg |
33428101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 26 - 230
Target Start/End: Complemental strand, 5384 - 5180
Alignment:
| Q |
26 |
agatgaaacaacagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcagaa |
125 |
Q |
| |
|
|||||| |||| ||||||||||| |||||| || || | |||||||||| ||| ||||| ||||||||||||||||| ||||| |||||| |||||||| |
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|
| T |
5384 |
agatgatacaatagagtgagcattagaagatggaggagtggaaggagcagatgcgccttctgctagaacagtgatgacaaactttatttgatgagcagaa |
5285 |
T |
|
| Q |
126 |
cagtgatcagcaactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
225 |
Q |
| |
|
|| |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5284 |
caatgatcagctacgccacaaacataccactttcttccttcagtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaag |
5185 |
T |
|
| Q |
226 |
tgcag |
230 |
Q |
| |
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||||| |
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|
| T |
5184 |
tgcag |
5180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 65 - 269
Target Start/End: Complemental strand, 24985253 - 24985049
Alignment:
| Q |
65 |
agaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcagaacagtgatcagcaactccacaaacataccactttcttcct |
164 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| ||||||| | ||||||||||||||||| || |||| || |||||| |||||||||||||||||| |
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| T |
24985253 |
agaaggcgaaggtgcaccttcttctagtacattgatgacaagcttcatttgacgagcagcgcaatgatttgcctttccacatacataccactttcttcct |
24985154 |
T |
|
| Q |
165 |
tctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaacat |
264 |
Q |
| |
|
|| ||||| |||||||| | |||||||| || |||||||||||||||| || ||||||||||||||||||||||||| | |||| |||||||| |||| |
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|
| T |
24985153 |
tcggttttcagttgaataacgtcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaagagtttaccatccactttgaagacat |
24985054 |
T |
|
| Q |
265 |
tgtgc |
269 |
Q |
| |
|
||||| |
|
|
| T |
24985053 |
tgtgc |
24985049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 65 - 269
Target Start/End: Complemental strand, 24991083 - 24990879
Alignment:
| Q |
65 |
agaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagcagaacagtgatcagcaactccacaaacataccactttcttcct |
164 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| ||||||| | ||||||||||||||||| || |||| || |||||| |||||||||||||||||| |
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|
| T |
24991083 |
agaaggcgaaggtgcaccttcttctagtacattgatgacaagcttcatttgacgagcagcgcaatgatttgcctttccacatacataccactttcttcct |
24990984 |
T |
|
| Q |
165 |
tctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttgaaagagtgtgccatttactttgaaaacat |
264 |
Q |
| |
|
|| ||||| |||||||| | |||||||| || |||||||||||||||| || ||||||||||||||||||||||||| | |||| |||||||| |||| |
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| T |
24990983 |
tcggttttcagttgaataacgtcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaagagtttaccatccactttgaagacat |
24990884 |
T |
|
| Q |
265 |
tgtgc |
269 |
Q |
| |
|
||||| |
|
|
| T |
24990883 |
tgtgc |
24990879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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