View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21542_high_15 (Length: 240)
Name: NF21542_high_15
Description: NF21542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21542_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 37 - 219
Target Start/End: Original strand, 13086729 - 13086908
Alignment:
| Q |
37 |
tttttggcacacgtaactttaacttttgtccaaaaactgtgaaaaaatgcaggccattgctatatatagcgaagaaatatccaacgattttgtcccgaac |
136 |
Q |
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| T |
13086729 |
tttttggcacacgtaactttaacttttgtacataaactgtgaaaaaatgcaggccattgctatatatagcgaagaaatatccaacgattttgtcccgaac |
13086828 |
T |
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| Q |
137 |
tgagaaaagctgttaaaaagcaccccactaataaccatacatgagggtggtgttattagtaaactaattacttattgtacata |
219 |
Q |
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| T |
13086829 |
tgagaaaagctgttaaaaagcaccccactaat---catacatgagggtggtgttattagtaaaataattacttattgtacata |
13086908 |
T |
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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 16801022 - 16800900
Alignment:
| Q |
88 |
ggccattgctatatatagcgaagaaatatccaacgattttgtcccgaactgagaaaagctgttaaaaagcaccccactaataaccatacatgagggtggt |
187 |
Q |
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| T |
16801022 |
ggccattgcaatatacagcgaagaaatatccaacgaatttatcccgaactaagaacagccgttaaaaaccaccc--ccactaaccatacatgggggtggt |
16800925 |
T |
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| Q |
188 |
gttattagtaaactaattacttattgta |
215 |
Q |
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| T |
16800924 |
g---ttagtaaaataattacttattgta |
16800900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 46922555 - 46922437
Alignment:
| Q |
88 |
ggccattgctatatatagcgaagaaatatccaacgattttgtcccgaactgagaaaagctgttaaaaagcaccccactaataaccatacatgagggtggt |
187 |
Q |
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| T |
46922555 |
ggccattgctatatacagcgaa-aaatatccaatgaaattgtcccgagctgttctcggctgttaaaaagccccccactaa---ccatacatgggggtggt |
46922460 |
T |
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| Q |
188 |
gttattagtaaactaattactta |
210 |
Q |
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| T |
46922459 |
gttattagtaaaataattactta |
46922437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 50933803 - 50933738
Alignment:
| Q |
101 |
tatagcgaagaaatatccaacgattttgtcccgaactgagaaaagctgttaaaaagcaccccactaa |
167 |
Q |
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| T |
50933803 |
tatagcgaagaaatatccagcgaatttatcccgaaaagagagaagctattaaaaagc-ccccactaa |
50933738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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