View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21542_high_5 (Length: 433)
Name: NF21542_high_5
Description: NF21542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21542_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 173; Significance: 7e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 188 - 384
Target Start/End: Original strand, 21770029 - 21770225
Alignment:
| Q |
188 |
atttttgtaagtcgtatagtgtgggagagaaaagggctcttgaatgccttgggaaatttgtacgcatcttgtacttgggtttagttcttgctgtattggc |
287 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
21770029 |
atttttgcaagtcgtatagtgtgggagagaaaagggctcttgaatgccttaggaaatttgtacgcatcttgtactcgggtttagttcttgctgtattagc |
21770128 |
T |
|
| Q |
288 |
cggatctcaaccatttctttgtgaataatataaatgaacctttaagtggatccccaacctagcatgattcaagcatggtgttgcatgtccctcttcc |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21770129 |
cggatctcaaccatttctttgtgaataatataaatgaacctttaagtggatccccaacctaacataattcaagcatggtgttgcatgtccctcttcc |
21770225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 21769397 - 21769303
Alignment:
| Q |
1 |
tattattataaatttaatgatatttcatagaaaattgaccaaatcacttgagggaaaat-aaacctggctacagctgcacaaaaatcttccatca |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21769397 |
tattattataaatttaatgatatttcatagaaaattgaccaaatcacttgagggaaaataaaacctggctacagctgcacaaaaatcttccatca |
21769303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 21769459 - 21769558
Alignment:
| Q |
84 |
atcttccatcagttgcattctgtattttcatttttctagtgaattaaaattgtctggtttaaatcatggattacagatgggtcc-ttcatgtaattgctt |
182 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21769459 |
atcttccaccagttgcattctgtattttcatttctctagcgaattaaaattgtcttgttttaatcatggattacagatgggtcctttcatgtaattgctt |
21769558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 37937933 - 37937888
Alignment:
| Q |
192 |
ttgtaagtcgtatagtgtgggagagaaaagggctcttgaatgcctt |
237 |
Q |
| |
|
||||||| | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37937933 |
ttgtaagacatatagtgtgggagagaaaaggcctcttgaatgcctt |
37937888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 32923597 - 32923661
Alignment:
| Q |
28 |
tagaaaattgaccaaatcacttgagggaaaataaa-cctggctacagctgcacaaaaatcttcca |
91 |
Q |
| |
|
||||||||||||| | | ||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
32923597 |
tagaaaattgaccgagtaacttgagggaaaataaaacctggctacagctgcacaaaaaccttcca |
32923661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University