View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21542_high_9 (Length: 331)
Name: NF21542_high_9
Description: NF21542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21542_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 7 - 316
Target Start/End: Original strand, 38966532 - 38966841
Alignment:
| Q |
7 |
taaaaaaccctaatggaaacaaagttcagtatcagaaacgcagagattttccaacagatagcagaaaatattgttatacacttgagattgaagagagaag |
106 |
Q |
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| T |
38966532 |
taaaaaaccctaatggaaacaaagttcagtatcagaaacgcagagattttccaacagatagcagaaaatattgttatacacttgaggctgaagagagaag |
38966631 |
T |
|
| Q |
107 |
aaggtatttggtaagagctacttttcagtatggaagtttgcaaaatggagacacataccctcagtttcaactttacttggatgcaactaaatgggctact |
206 |
Q |
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| T |
38966632 |
aaggtatttggtaagagctacttttcagtatggaagtttgcaaaatggagacacataccctcagtttcaactttacttggatgcaactaaatgggctact |
38966731 |
T |
|
| Q |
207 |
gtgtcaatttatgatgagtcaagaatatatgttaaggaaatgatctttagggcaccttcaaattctgttgatgtttgcatctgttgtgctacaactggtt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38966732 |
gtgtcaatttatgatgagtcaagaatatatgttaaggaaatgatctttagagcaccttcaaattctgttgatgtttgcatctgttgtgctacaactggtt |
38966831 |
T |
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| Q |
307 |
ctcctttcat |
316 |
Q |
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| T |
38966832 |
ctcctttcat |
38966841 |
T |
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