View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21542_low_12 (Length: 321)
Name: NF21542_low_12
Description: NF21542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21542_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 30267417 - 30267119
Alignment:
| Q |
16 |
cttggatcattattagagagtatgtcactattttttgaaagttgctcaatacaccgctcaaaatgttcacatatctctcaaatttcgaaaagagcccctc |
115 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30267417 |
cttggatcattattagagagtatgtcacttttttttgaaagttgctcaatacaccgctcaaaatgttcacatatctctcaaatttcgaaaagagcccctc |
30267318 |
T |
|
| Q |
116 |
tcggtttgtaacttccgatccctctaatt--caggagttaagaccgtatatgccctcaattcaatttaatcttggataggaagtaaaagcccaagaacag |
213 |
Q |
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|| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30267317 |
tcagtttgtaacttccgatccctctgattatcaggagttaagaccgtatatgccctcaattcaatttaatcttggataggaagtaaaagcccaagaacag |
30267218 |
T |
|
| Q |
214 |
atcggtagttagaatttgatacactcttgtattagacttagacaaaatttacagtaccaaacacataattcaacaagtacttgtattttcaagaataat |
312 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30267217 |
atcggtagttagaatctgatacactcttgtattagacttagacaaaatttacagtaccaaacacataattcaacaagcacttgtattttcaagaataat |
30267119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 30284771 - 30285069
Alignment:
| Q |
16 |
cttggatcattattagagagtatgtcactattttttgaaagttgctcaatacaccgctcaaaatgttcacatatctctcaaatttcgaaaagagcccctc |
115 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30284771 |
cttggatcattattagagagtatgtcacttttttttgaaagttgctcaatacaccgctcaaaatgttcacatatctctcaaatttcgaaaagagcccctc |
30284870 |
T |
|
| Q |
116 |
tcggtttgtaacttccgatccctctaatt--caggagttaagaccgtatatgccctcaattcaatttaatcttggataggaagtaaaagcccaagaacag |
213 |
Q |
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|| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30284871 |
tcagtttgtaacttccgatccctctgattatcaggagttaagaccgtatatgccctcaattcaatttaatcttggataggaagtaaaagcccaagaacag |
30284970 |
T |
|
| Q |
214 |
atcggtagttagaatttgatacactcttgtattagacttagacaaaatttacagtaccaaacacataattcaacaagtacttgtattttcaagaataat |
312 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30284971 |
atcggtagttagaatctgatacactcttgtattagacttagacaaaatttacagtaccaaacacataattcaacaagcacttgtattttcaagaataat |
30285069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 23189503 - 23189577
Alignment:
| Q |
211 |
cagatcggtagttagaatttgatacactcttgtattagacttagacaaaatttacagtaccaaacacataattca |
285 |
Q |
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|||||||| |||||| ||||||| || || || ||||||||||||| |||||||| |||||||||||||||||| |
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| T |
23189503 |
cagatcgggagttaggatttgatccattcatgctttagacttagacataatttacactaccaaacacataattca |
23189577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 285
Target Start/End: Original strand, 23175658 - 23175696
Alignment:
| Q |
247 |
agacttagacaaaatttacagtaccaaacacataattca |
285 |
Q |
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||||||||||| ||||||||||||||||||| ||||||| |
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| T |
23175658 |
agacttagacataatttacagtaccaaacacgtaattca |
23175696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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