View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21542_low_2 (Length: 582)
Name: NF21542_low_2
Description: NF21542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21542_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 52592446 - 52592800
Alignment:
| Q |
11 |
caaaggactcgaggtgaacatatccatataggaccctgaagagaatgcttggttgggatacattctaagttacaagacaagatcagcacttgttgggaac |
110 |
Q |
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| T |
52592446 |
caaaggactcgaggtgaacatatccatataggaccctgaagagaatgcttggttgggatacattctaagttacaagacaagatcagcacttgttgggaac |
52592545 |
T |
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| Q |
111 |
aagaacctcacttctggtctcttcacaacaatgaaatcagcttgatatctttttcaatgggaaacaattgtcttggcgatgattatgcaatatttcatct |
210 |
Q |
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| T |
52592546 |
aagaacctcacttctggtctcttcacaacaatgaaatcagcttgatatctttttcaatgggaaacaattgtcttggcgatgattatgcaatatttcatct |
52592645 |
T |
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| Q |
211 |
tctattctgataacaatgaatttcaatcaaaagaacattatgattattatggaatacaaaatacggtttttggaggtggggaagattacctaagttatta |
310 |
Q |
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| T |
52592646 |
tctattctgataacaatgaatttcaatcaaaagcacattatgattattatggaatacaaaatacggttttcggaggtggggaagattacctaagttatta |
52592745 |
T |
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| Q |
311 |
aacaagaccaaaaacataaagatggcattagattatagactatattgggctatta |
365 |
Q |
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| T |
52592746 |
aacaagaccaaaaacataaagatggcattagtttatagactatattgggctatta |
52592800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 433 - 564
Target Start/End: Original strand, 52592866 - 52592997
Alignment:
| Q |
433 |
gtgaccagtgtaatttcaaccataaaaaacaaagcatttcaagcatataagaacataatttatttgtataatggattgttccctgtttggttatcattta |
532 |
Q |
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| T |
52592866 |
gtgaccagtgtaatttcaaccataaaaaacaaagcatttcaagcatgtaagaacagaatttatttgtataatggattgttccctgtttggttatcattta |
52592965 |
T |
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| Q |
533 |
ttcaaatccgggtttttgatattgttgagaca |
564 |
Q |
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| T |
52592966 |
ttcaaatccgggtttttgatattgttgagaca |
52592997 |
T |
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