View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21542_low_3 (Length: 558)
Name: NF21542_low_3
Description: NF21542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21542_low_3 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 60 - 539
Target Start/End: Original strand, 11991840 - 11992300
Alignment:
| Q |
60 |
tccaacattgcatgcaattactcaccagaatatcaagtttgccaaattgggatttgacaaaatctgcaagagatgctacacttgaagcatcatccacatc |
159 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| |
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|
| T |
11991840 |
tccaacattgcatgtaattactcaccagaatatcaagttttccaaattgagatttgacaaaatctgcaagagatgctacacttgaagcatcagcaacatc |
11991939 |
T |
|
| Q |
160 |
tagttgatgaaatacaacaaaatcagataaaccagatgctttaagtgtttccaaagcatgaagacctcttttctcatctcttgatgtgagcaccactttg |
259 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
11991940 |
tagttgatgaaatacaacaaaatcagaaagaccagaagctttaagtgtttccaaagcatgaagacctcttttctcatctcttgatgtaagcaccactttg |
11992039 |
T |
|
| Q |
260 |
attccagatgaagctaactgctttactatctctaacccaattcctttgtttgcacctgtcaccactgcatacct--aaggaagagaggcactaaggatta |
357 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
11992040 |
attacagctgaagctaactgctttactatctctaacccaattcctttgtttgcacctgtcaccactgcatacctaaaaggtagagaggcactaaggatta |
11992139 |
T |
|
| Q |
358 |
gtaaaaaatctattaagattcaaaaacatggtttgattggatatgctaaagaaagtataccacaaaagaaagaaagaatgaaagtttgttactacctttc |
457 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
11992140 |
gtaaaaaatcta-taagattcaaaaacatggtt-------------------aagtata-cacaaaagaaagaaataatgaaagtttgttactacctttc |
11992218 |
T |
|
| Q |
458 |
tcttggttctcccatattttgttggaactcaaaaagtgttaacttggaaaatttgaagatgctcttctagttcaagatatat |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |
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|
| T |
11992219 |
tcttggttctcccatattttgttggaactcaaaaagtgttaacttgggaaatttgaagatgcttttctggttcaagatatat |
11992300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 83 - 341
Target Start/End: Original strand, 12009840 - 12010098
Alignment:
| Q |
83 |
accagaatatcaagtttgccaaattgggatttgacaaaatctgcaagagatgctacacttgaagcatcatccacatctagttgatgaaatacaacaaaat |
182 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||||| ||||| |||||||||| |||||| |||||||||||||||||||||||||||||| |
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|
| T |
12009840 |
accagaatatcaagtttgccaaatcgagatttaacaaaatctgcgagagaggctacacttgcggcatcagccacatctagttgatgaaatacaacaaaat |
12009939 |
T |
|
| Q |
183 |
cagataaaccagatgctttaagtgtttccaaagcatgaagacctcttttctcatctcttgatgtgagcaccactttgattccagatgaagctaactgctt |
282 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| || |
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|
| T |
12009940 |
cagataaaccagatgctttgagtgtttccaaagcatgaagacctcttttctcatctcttgatgtgagcaccactttgattctagctgaagctaactgttt |
12010039 |
T |
|
| Q |
283 |
tactatctctaacccaattcctttgtttgcacctgtcaccactgcatacctaaggaaga |
341 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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|
| T |
12010040 |
aactatctctaacccaattcctttgtttgctcctgtcaccactgcatacctgaggaaga |
12010098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 83 - 342
Target Start/End: Original strand, 12004748 - 12005007
Alignment:
| Q |
83 |
accagaatatcaagtttgccaaattgggatttgacaaaatctgcaagagatgctacacttgaagcatcatccacatctagttgatgaaatacaacaaaat |
182 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
12004748 |
accagaatatcaagtttgccaaattgagatttgataaaatctgcaagagaggctacacttgcagcatcagccacatctagttgatgaaatacaacaaaat |
12004847 |
T |
|
| Q |
183 |
cagataaaccagatgctttaagtgtttccaaagcatgaagacctcttttctcatctcttgatgtgagcaccactttgattccagatgaagctaactgctt |
282 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||| | |
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|
| T |
12004848 |
cagataaaccagatgctttgagtgtttccaaagcatgaagacctcttttctcatctcttgctgtaagcaccactttgattccagctgaagctaattgcct |
12004947 |
T |
|
| Q |
283 |
tactatctctaacccaattcctttgtttgcacctgtcaccactgcatacctaaggaagag |
342 |
Q |
| |
|
|||||||||||| |||||||||||||| | || ||||||||||||||||| || ||||| |
|
|
| T |
12004948 |
tactatctctaatccaattcctttgttcgatccagtcaccactgcatacctgagaaagag |
12005007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 83 - 328
Target Start/End: Original strand, 11979999 - 11980244
Alignment:
| Q |
83 |
accagaatatcaagtttgccaaattgggatttgacaaaatctgcaagagatgctacacttgaagcatcatccacatctagttgatgaaatacaacaaaat |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11979999 |
accagaatatcaagtttgccaaattgggatttgacaaaatctgcaagagtagctacacttgcagcatttgccacatctagttgatgaaatacaacaaaat |
11980098 |
T |
|
| Q |
183 |
cagataaaccagatgctttaagtgtttccaaagcatgaagacctcttttctcatctcttgatgtgagcaccactttgattccagatgaagctaactgctt |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||| | |
|
|
| T |
11980099 |
cagataaaccagatgctttaagtgtttccaatgcatgaagacctcttttctcatctcttgctgtaagcaccactttgattccagctgaagctaattgcct |
11980198 |
T |
|
| Q |
283 |
tactatctctaacccaattcctttgtttgcacctgtcaccactgca |
328 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
11980199 |
tactatctctaatccaattcctttgtttgatcctgtcaccactgca |
11980244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 83 - 344
Target Start/End: Original strand, 11999530 - 11999791
Alignment:
| Q |
83 |
accagaatatcaagtttgccaaattgggatttgacaaaatctgcaagagatgctacacttgaagcatcatccacatctagttgatgaaatacaacaaaat |
182 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
11999530 |
accagaatatcaagtttgccaaaatgggatttgacaaaatctgcaagagatgctacacttgaagcatcagcaacatctagttgatgaaataaaacaaaat |
11999629 |
T |
|
| Q |
183 |
cagataaaccagatgctttaagtgtttccaaagcatgaagacctcttttctcatctcttgatgtgagcaccactttgattccagatgaagctaactgctt |
282 |
Q |
| |
|
| || | |||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||||| | |
|
|
| T |
11999630 |
ctgaaagaccagaagctttgagtgtttccaaagcatgaagacctcttttctcatctcttgctgtcagcacaactttgattccatctgaagctaactgcct |
11999729 |
T |
|
| Q |
283 |
tactatctctaacccaattcctttgtttgcacctgtcaccactgcatacctaaggaagagag |
344 |
Q |
| |
|
||||||||| || |||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
11999730 |
tactatctcaaatccaattcctttgtttgatcctgtcaccactgcatacctgaggaagagag |
11999791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 83 - 433
Target Start/End: Original strand, 12014415 - 12014755
Alignment:
| Q |
83 |
accagaatatcaagtttgccaaattgggatttgacaaaatctgcaagagatgctacacttgaagcatcatccacatctagttgatgaaatacaacaaaat |
182 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||| || |||||||| |||||||||| ||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
12014415 |
accagaatatcaagtttgccaaatcgagatttgacaaattccgcaagagaagctacacttgcagcatcagcaacatctagttgatgaaatacaacaaaat |
12014514 |
T |
|
| Q |
183 |
cagataaaccagatgctttaagtgtttccaaagcatgaagacctcttttctcatctcttgatgtgagcaccactttgattccagatgaagctaactgctt |
282 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12014515 |
cagataaaccagaggctttgagtgtttccaaagcatgaagacctcttttctcatctcttgcagtaagcaccactttgattccagctgaagctaactgctt |
12014614 |
T |
|
| Q |
283 |
tactatctctaacccaattcctttgtttgcacctgtcaccactgcatacctaaggaagagaggcactaaggattagtaaaaaatctattaagattcaaaa |
382 |
Q |
| |
|
|||||||| || ||||| ||||||||||| || ||||||||||||||||| |||||||||| || ||||||||| ||||||||| || ||||| ||| |
|
|
| T |
12014615 |
aactatctcaaatccaatccctttgtttgctccagtcaccactgcatacctgaggaagagagatac-aaggattag--aaaaatcta-tatgattc-aaa |
12014709 |
T |
|
| Q |
383 |
acatggtttgattggatatgctaaagaaagtataccacaaaagaaagaaag |
433 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||||| | | ||||||||| |
|
|
| T |
12014710 |
acatgg-----ttggatatgttaaagaatgtataccaaagaggaaagaaag |
12014755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 83 - 333
Target Start/End: Original strand, 11974924 - 11975174
Alignment:
| Q |
83 |
accagaatatcaagtttgccaaattgggatttgacaaaatctgcaagagatgctacacttgaagcatcatccacatctagttgatgaaatacaacaaaat |
182 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
11974924 |
accaaaatatcaagtttgccaaattgtgatttgacaaaatctgcaagagaggctacacttgcatcatcagccacatctagttgatgaaaggcaacaaaat |
11975023 |
T |
|
| Q |
183 |
cagataaaccagatgctttaagtgtttccaaagcatgaagacctcttttctcatctcttgatgtgagcaccactttgattccagatgaagctaactgctt |
282 |
Q |
| |
|
||||||||||| | ||||| ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
11975024 |
cagataaaccataggctttgagtgtttgcaaagcatgaagacctcttttctcatctcttgctgtaagcaccactttgattccagctgaagctaattgctt |
11975123 |
T |
|
| Q |
283 |
tactatctctaacccaattcctttgtttgcacctgtcaccactgcatacct |
333 |
Q |
| |
|
||||| || |||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
11975124 |
aactatttcaaacccaattcctttgtttgctccagtcaccactgcatacct |
11975174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 83 - 328
Target Start/End: Original strand, 11984356 - 11984601
Alignment:
| Q |
83 |
accagaatatcaagtttgccaaattgggatttgacaaaatctgcaagagatgctacacttgaagcatcatccacatctagttgatgaaatacaacaaaat |
182 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| | ||||||||| ||||| ||| |||||||||| |
|
|
| T |
11984356 |
accagaatatcaagtttgccaaattgcgatttgacaaaatctgcaagagtagctacacttgcagcattagccacatctacttgataaaagacaacaaaat |
11984455 |
T |
|
| Q |
183 |
cagataaaccagatgctttaagtgtttccaaagcatgaagacctcttttctcatctcttgatgtgagcaccactttgattccagatgaagctaactgctt |
282 |
Q |
| |
|
| || | |||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
11984456 |
ctgaaagaccagaagctttgagtgtttccaaagcatgaagacctcttttctcatctcttgctgtaagcacaactttgattccagctgaagctaactgctt |
11984555 |
T |
|
| Q |
283 |
tactatctctaacccaattcctttgtttgcacctgtcaccactgca |
328 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||||||||||| |
|
|
| T |
11984556 |
aactatctcaaacccaattcctttgtttgctccagtcaccactgca |
11984601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 43494684 - 43494732
Alignment:
| Q |
286 |
tatctctaacccaattcctttgtttgcacctgtcaccactgcataccta |
334 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
43494684 |
tatctcaaatccaattcctttgtttgctcctgtcaccaccgcataccta |
43494732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 35671981 - 35671925
Alignment:
| Q |
278 |
tgctttactatctctaacccaattcctttgtttgcacctgtcaccactgcataccta |
334 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
35671981 |
tgcttcactatctccagtccaatgcctttgtttgcacctgtaactactgcataccta |
35671925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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