View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21542_low_4 (Length: 484)
Name: NF21542_low_4
Description: NF21542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21542_low_4 |
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| [»] scaffold0024 (3 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 35 - 456
Target Start/End: Original strand, 30427 - 30836
Alignment:
| Q |
35 |
gaaacaatagtcactttgatagtggaaatggtttcgccttcacaaatagcgctttctaattatgtaattttttcttatcttatcatctctaattagcttc |
134 |
Q |
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| T |
30427 |
gaaacaacagtcactttcatagtggaaatgatttcaccttcacaaatagcgctttctaattatgtacttttttcttatcttatcatctctaattagcttc |
30526 |
T |
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| Q |
135 |
cattgaattacataacgccataaaggtgttagctta--gtgataagagtttaacgacaaagttctctcagggtcggctgtaaaatagtcattagtgtttt |
232 |
Q |
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| T |
30527 |
cattgaattacataatgccataa-ggtgttagcttaacgtcataacc-tcaagagataaagttctctcagggtcgattgtaaaatagtcattagtgtttt |
30624 |
T |
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| Q |
233 |
tctactaataatagttatgactagtttatgctgaaatatctatttattggtttgtggtcaggtgtcctgtggaggtactcattctgttgcattatcccga |
332 |
Q |
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| T |
30625 |
tttactaataatagttatgactagtt-atgctgaaatatctatttattggtttgtggtcaggtgtcttgtggaggtactcattctgttgcattaacccga |
30723 |
T |
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| Q |
333 |
gatgggcgcatattttctgtaagtagtttgctcaccatctcaattttcattctgttgcattattggttttgtttaatcttaaataaaagtcacaccaaat |
432 |
Q |
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| T |
30724 |
gatgggcgcatattttctgtaagtagtttgctcaccatctcaattttctttgc----cat-----gttttgtttaatctgaaataaaagt--caccaaaa |
30812 |
T |
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| Q |
433 |
cttgatatcccctttatatattga |
456 |
Q |
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| T |
30813 |
tttgatattccctttatatattga |
30836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 342 - 468
Target Start/End: Original strand, 65702 - 65824
Alignment:
| Q |
342 |
atattttctgtaagtagtttgctcaccatctcaattttcattctgttgcattattggttttgtttaatcttaaataaaagtcacaccaaatcttgatatc |
441 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
65702 |
atattttctgtaagtagttt----accatctcaattttcattctgttgcattattggttttgtttaatcttaaataaaagtcacaccaaatcttgatatc |
65797 |
T |
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| Q |
442 |
ccctttatatattgaattattgatatt |
468 |
Q |
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| T |
65798 |
ccctttatatattgaattattgatatt |
65824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 65635 - 65704
Alignment:
| Q |
13 |
gtagcataggtatcatggttatgaaacaatagtcactttgatagtggaaatggtttcgccttcacaaata |
82 |
Q |
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| T |
65635 |
gtagcataggtatcatggttatgaaacaatagtcactttgatagtggaaatggtttcgccttcacaaata |
65704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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