View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21542_low_7 (Length: 402)
Name: NF21542_low_7
Description: NF21542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21542_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 8e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 2597932 - 2597779
Alignment:
| Q |
7 |
aagatgaagtgaggaaaaatctgttgaattatgatttgtggtttgattatataagatggaaagagagtgtcgggaataaggaaagaactatggaggttta |
106 |
Q |
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| T |
2597932 |
aagatgaagtgaggaaaaatctgttgaattatgatta-tggtttgattatataagatggaaagagagtgtcgggaataaggaaagaactatggaggttta |
2597834 |
T |
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| Q |
107 |
tgagagagctatagctgatgttcctctagccgatgagaagcgatactggtagcac |
161 |
Q |
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| T |
2597833 |
tgagagagctatagctaatgttcctctagccgatgagaatcgatactggcagcac |
2597779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 263 - 391
Target Start/End: Complemental strand, 2597677 - 2597549
Alignment:
| Q |
263 |
tccatgtgtaacttaggattaattatgcactttatgaagaacttaatgttggagatattgagcgaacaagagacgtgtacagataagcagccttttctga |
362 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2597677 |
tccatgtgtaactttggattagttatgcactttatgaagaacttaatgttggagatattgagcgaacaagagacgtgtacaggtaagcagccttttctga |
2597578 |
T |
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| Q |
363 |
acctccgagcattgtgtttatatatctgt |
391 |
Q |
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| T |
2597577 |
acctccgagcattgtgtttatatatctgt |
2597549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 49276550 - 49276430
Alignment:
| Q |
12 |
gaagtgaggaaaaatctgttgaattatgatttgtggtttgattatataagatggaaagagagtgtcgggaataaggaaagaactatggaggtttatgaga |
111 |
Q |
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| T |
49276550 |
gaagtgagggaaaatcctttcaactatgattcctggtttgaatatatacgattggaagaaagtgtaggggataaggaaaaaactagggaggtttatgaga |
49276451 |
T |
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| Q |
112 |
gagctatagctgatgttcctc |
132 |
Q |
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|||||||| || ||||||||| |
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| T |
49276450 |
gagctatatctaatgttcctc |
49276430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 49280065 - 49279987
Alignment:
| Q |
54 |
tatataagatggaaagagagtgtcgggaataaggaaagaactatggaggtttatgagagagctatagctgatgttcctc |
132 |
Q |
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|||||| ||| | |||| ||||| ||| || |||||| ||||| |||||||||||||||||||||| || ||||||||| |
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| T |
49280065 |
tatatacgattggaagaaagtgtgggggatgaggaaaaaactagggaggtttatgagagagctatatctaatgttcctc |
49279987 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 34788413 - 34788561
Alignment:
| Q |
7 |
aagatgaagtgaggaaaaatctgttgaattatgatttgtggtttgattatataagatggaaagagagtgtcgggaataaggaaagaactatggaggttta |
106 |
Q |
| |
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|||||||||| | |||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| |
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| T |
34788413 |
aagatgaagttatgaaaaatccattgaattatgatttgtggtttgattatataagattggaagagagtgtcgggaataaggaaagaactagggaggttta |
34788512 |
T |
|
| Q |
107 |
tgagagagctatagctgatgttcctctagccgatgagaagcgatactgg |
155 |
Q |
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|||||||||||||||| |||| |||||||| || ||||||||||||||| |
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| T |
34788513 |
tgagagagctatagctaatgtacctctagctgaggagaagcgatactgg |
34788561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 34788673 - 34788769
Alignment:
| Q |
268 |
gtgtaacttaggattaattatgcactttatgaagaacttaatgttggagatattgagcgaacaagagacgtgtacagataagcagccttttctgaac |
364 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||||||||| ||||||| ||||||||||||| ||||| |
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| T |
34788673 |
gtgtatcttaggattaattatgcactttatgaagaacttgatgctggagatatggagcaaacaagagatgtgtacaagtaagcagccttttgtgaac |
34788769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 155
Target Start/End: Complemental strand, 2292781 - 2292633
Alignment:
| Q |
7 |
aagatgaagtgaggaaaaatctgttgaattatgatttgtggtttgattatataagatggaaagagagtgtcgggaataaggaaagaactatggaggttta |
106 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||||||| |
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| T |
2292781 |
aagatgaagtgaggaaaaatccgttgaattatgattcatggtttgattatataagattggaagagagtgttgggaataaggaaagaactagggaggttta |
2292682 |
T |
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| Q |
107 |
tgagagagctatagctgatgttcctctagccgatgagaagcgatactgg |
155 |
Q |
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||||||||||||||| ||||||||| || || ||||||||||||||| |
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| T |
2292681 |
tgagagagctatagccaatgttcctcctgctgaggagaagcgatactgg |
2292633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 271 - 391
Target Start/End: Complemental strand, 2292517 - 2292397
Alignment:
| Q |
271 |
taacttaggattaattatgcactttatgaagaacttaatgttggagatattgagcgaacaagagacgtgtacagataagcagccttttctgaacctccga |
370 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||| |||||| || |||||||||||||||||||||| ||||||||||||| ||||| ||| | |
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| T |
2292517 |
taacttaggattaattatgcactctatgaagaactcgatgctggagacatggagcgaacaagagacgtgtacaagtaagcagccttttgtgaacttccaa |
2292418 |
T |
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| Q |
371 |
gcattgtgtttatatatctgt |
391 |
Q |
| |
|
|||||||||||| || ||||| |
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| T |
2292417 |
gcattgtgtttaaatctctgt |
2292397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 24602117 - 24602246
Alignment:
| Q |
5 |
caaagatgaagtgaggaaaaatctgttgaattatgatttgtggtttgattatata----agatggaaagagagtgtcgggaataaggaaagaactatgga |
100 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||| ||||||||||||||| | || | ||||| |||| |||||||||||| ||| | ||| |
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| T |
24602117 |
caaagatgaagcgaggataaatcgcttgaattatgattcttggtttgattatatatataatattggaagag--tgtcaggaataaggaaacaaccaagga |
24602214 |
T |
|
| Q |
101 |
ggtttatgagagagctatagctgatgttcctc |
132 |
Q |
| |
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|||||||||||||||| ||||| ||||||||| |
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|
| T |
24602215 |
ggtttatgagagagctgtagctaatgttcctc |
24602246 |
T |
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