View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21543_high_12 (Length: 283)
Name: NF21543_high_12
Description: NF21543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21543_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 31432639 - 31432896
Alignment:
| Q |
12 |
atgaacattaattctcttattatatattatatctcttttatttacactgcacttttattccatctacacagtttagcagcctaattcttttaatatcggc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31432639 |
atgaacattaattctcttattatatattatatctcttttatttacattgcacttttattccatctacacagtttagcagcctaattcttttaatatcagc |
31432738 |
T |
|
| Q |
112 |
atcttgtgatgttgttacttgttgctcaagattctcatatcagatttaaccatgacatgtgtaaagatattgcaaggtccttttcacttctcgaaataag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31432739 |
atcttgtgatgttgttacttgttgctcaagattctcatatcagatttaaccatgacatgtgtaaagatattgtaaggtccttttcacttctcgaaataag |
31432838 |
T |
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| Q |
212 |
gcgtatatcttcaaaatcattgcaacttcttgctagttagacatcaaatatttctctt |
269 |
Q |
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| T |
31432839 |
gtgtatatcttcaaaatcattgcaacttcttgctagttagacatcaaatattcctctt |
31432896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 269
Target Start/End: Complemental strand, 33378118 - 33377950
Alignment:
| Q |
111 |
catcttgtgatgttgttacttgttgctcaagattctcatatcagatttaaccatgacatgtgtaaagatattgcaaggtccttttcacttctcgaaataa |
210 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| || |||| | ||||| || |||||| ||| |
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| T |
33378118 |
catcttatgatgttgttacttgttgctcaagattctcagatcagatttaaccatgacatgtgaaaagataatgtaaggactttttcgctgctcgaagtaa |
33378019 |
T |
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| Q |
211 |
ggcg----------tatatcttcaaaatcattgcaacttcttgctagttagacatcaaatatttctctt |
269 |
Q |
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|||| | |||||||| ||| |||||||||||||| |||||||| |||||||||| ||||| |
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| T |
33378018 |
ggcggatacatctttgtatcttcataataattgcaacttcttgttagttagatatcaaatattcctctt |
33377950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 111 - 269
Target Start/End: Original strand, 31439327 - 31439493
Alignment:
| Q |
111 |
catcttgtgatgttgttacttgttgctcaagattctcatatcagatttaaccatgacatgtgtaaagatattgcaaggtccttttcacttctcgaaataa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| || ||||||| || || ||| |||||||| |||||||||| |
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| T |
31439327 |
catcttgtgatgttgttacttgttgctcaaggttc--agatcagatttaaccatgacatatgaaaagataatgtaaagtctttttcactactcgaaataa |
31439424 |
T |
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| Q |
211 |
ggcgta----------tatcttcaaaatcattgcaacttcttgctagttagacatcaaatatttctctt |
269 |
Q |
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|||||| |||||| ||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
31439425 |
ggcgtatacatcttcgtatctttgtaatcattgcaacttctttctagttagacatcaaatattcctctt |
31439493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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