View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21543_high_14 (Length: 256)

Name: NF21543_high_14
Description: NF21543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21543_high_14
NF21543_high_14
[»] chr5 (16 HSPs)
chr5 (1-248)||(26076355-26076603)
chr5 (5-124)||(8388286-8388404)
chr5 (1-124)||(25731008-25731130)
chr5 (1-124)||(20205155-20205277)
chr5 (3-124)||(22767140-22767260)
chr5 (1-124)||(27532771-27532893)
chr5 (1-124)||(26597331-26597444)
chr5 (1-124)||(11375387-11375509)
chr5 (66-125)||(23075031-23075090)
chr5 (1-124)||(27292634-27292755)
chr5 (66-124)||(4268299-4268357)
chr5 (66-124)||(15988678-15988736)
chr5 (5-107)||(30573546-30573647)
chr5 (70-124)||(41940670-41940724)
chr5 (4-124)||(32632715-32632833)
chr5 (66-125)||(12660515-12660574)
[»] chr8 (17 HSPs)
chr8 (1-124)||(477921-478043)
chr8 (1-124)||(13415223-13415345)
chr8 (1-124)||(33642629-33642751)
chr8 (1-124)||(11870464-11870586)
chr8 (1-124)||(40588595-40588717)
chr8 (5-124)||(598106-598224)
chr8 (66-124)||(23854132-23854190)
chr8 (12-124)||(7127423-7127534)
chr8 (1-115)||(28315316-28315428)
chr8 (1-124)||(8450988-8451110)
chr8 (12-124)||(9496978-9497089)
chr8 (12-124)||(3606613-3606726)
chr8 (1-104)||(36194486-36194588)
chr8 (66-124)||(37712273-37712331)
chr8 (66-107)||(185521-185562)
chr8 (68-124)||(8670245-8670301)
chr8 (1-29)||(34707910-34707938)
[»] chr4 (24 HSPs)
chr4 (1-124)||(2065053-2065175)
chr4 (1-124)||(21321730-21321852)
chr4 (1-124)||(32576913-32577035)
chr4 (1-124)||(37245717-37245839)
chr4 (1-124)||(49951513-49951635)
chr4 (12-124)||(23095414-23095525)
chr4 (1-124)||(18442012-18442134)
chr4 (1-124)||(28426383-28426505)
chr4 (1-124)||(49119265-49119387)
chr4 (1-124)||(56065833-56065955)
chr4 (1-124)||(8754328-8754450)
chr4 (1-124)||(26422467-26422589)
chr4 (1-124)||(51259394-51259516)
chr4 (1-124)||(51734837-51734959)
chr4 (1-124)||(41835176-41835298)
chr4 (66-124)||(44936011-44936069)
chr4 (12-124)||(29655542-29655653)
chr4 (1-124)||(24989799-24989921)
chr4 (66-123)||(28537716-28537773)
chr4 (12-119)||(43840201-43840307)
chr4 (70-124)||(47226263-47226317)
chr4 (12-45)||(47226208-47226241)
chr4 (66-118)||(40727169-40727221)
chr4 (85-121)||(55735212-55735248)
[»] chr7 (20 HSPs)
chr7 (1-124)||(16732133-16732255)
chr7 (1-124)||(17710267-17710389)
chr7 (1-124)||(29200821-29200942)
chr7 (1-114)||(24139221-24139333)
chr7 (1-124)||(33224425-33224547)
chr7 (1-124)||(44481287-44481409)
chr7 (12-124)||(24251639-24251750)
chr7 (1-124)||(30493475-30493597)
chr7 (62-124)||(16098690-16098752)
chr7 (4-124)||(3601852-3601971)
chr7 (1-124)||(30824360-30824481)
chr7 (5-124)||(3275234-3275353)
chr7 (66-124)||(9328531-9328589)
chr7 (66-124)||(22289441-22289499)
chr7 (1-124)||(47580075-47580196)
chr7 (1-124)||(17877598-17877720)
chr7 (1-124)||(1581816-1581939)
chr7 (69-124)||(35013759-35013814)
chr7 (66-124)||(35030583-35030641)
chr7 (66-118)||(6056306-6056358)
[»] chr6 (13 HSPs)
chr6 (1-124)||(11731534-11731656)
chr6 (1-124)||(14680362-14680484)
chr6 (1-124)||(34104330-34104452)
chr6 (5-124)||(15053044-15053162)
chr6 (1-124)||(15605859-15605981)
chr6 (1-124)||(21944493-21944615)
chr6 (5-116)||(27443141-27443251)
chr6 (76-124)||(3100446-3100494)
chr6 (53-124)||(29367972-29368043)
chr6 (66-124)||(28107339-28107397)
chr6 (61-124)||(19690803-19690866)
chr6 (66-102)||(5542589-5542625)
chr6 (191-242)||(33487843-33487895)
[»] chr3 (18 HSPs)
chr3 (1-124)||(53497232-53497354)
chr3 (1-124)||(27608768-27608890)
chr3 (1-124)||(34497237-34497359)
chr3 (1-124)||(2121281-2121403)
chr3 (1-124)||(42340142-42340264)
chr3 (21-124)||(647055-647157)
chr3 (5-124)||(31341594-31341712)
chr3 (66-124)||(55199711-55199769)
chr3 (5-124)||(55213525-55213643)
chr3 (5-124)||(26046888-26047006)
chr3 (66-124)||(27747614-27747672)
chr3 (17-124)||(2615683-2615789)
chr3 (1-124)||(48227568-48227690)
chr3 (66-124)||(1702818-1702876)
chr3 (1-124)||(11020046-11020167)
chr3 (1-120)||(19117585-19117703)
chr3 (68-124)||(49525125-49525181)
chr3 (191-242)||(26806353-26806405)
[»] chr1 (20 HSPs)
chr1 (1-124)||(48949589-48949711)
chr1 (1-124)||(4395358-4395480)
chr1 (1-124)||(5609539-5609661)
chr1 (1-121)||(51113518-51113637)
chr1 (20-124)||(44527453-44527556)
chr1 (5-124)||(44602952-44603065)
chr1 (66-124)||(25682851-25682909)
chr1 (12-124)||(16816673-16816784)
chr1 (1-124)||(21031349-21031471)
chr1 (66-124)||(17371648-17371706)
chr1 (1-124)||(2885427-2885549)
chr1 (76-124)||(36733896-36733944)
chr1 (1-92)||(5594266-5594356)
chr1 (1-124)||(14485210-14485332)
chr1 (66-118)||(23163357-23163409)
chr1 (61-124)||(24538687-24538750)
chr1 (69-124)||(48166427-48166482)
chr1 (66-124)||(4898549-4898607)
chr1 (66-124)||(52109653-52109711)
chr1 (91-124)||(38679050-38679083)
[»] chr2 (15 HSPs)
chr2 (1-124)||(88759-88881)
chr2 (1-124)||(34695769-34695891)
chr2 (1-124)||(34718181-34718303)
chr2 (1-124)||(9710155-9710277)
chr2 (1-124)||(12130503-12130625)
chr2 (1-115)||(11291929-11292042)
chr2 (66-124)||(18344223-18344281)
chr2 (12-124)||(35158719-35158832)
chr2 (81-124)||(1417925-1417968)
chr2 (5-124)||(25552345-25552463)
chr2 (1-118)||(22845732-22845845)
chr2 (1-124)||(14827280-14827401)
chr2 (66-124)||(13109798-13109856)
chr2 (66-124)||(26198882-26198940)
chr2 (1-48)||(1417855-1417903)
[»] scaffold0446 (1 HSPs)
scaffold0446 (1-124)||(390-512)
[»] scaffold0922 (1 HSPs)
scaffold0922 (66-123)||(193-250)
[»] scaffold0198 (1 HSPs)
scaffold0198 (1-124)||(20358-20480)
[»] scaffold0003 (1 HSPs)
scaffold0003 (5-116)||(44110-44220)
[»] scaffold0252 (1 HSPs)
scaffold0252 (68-124)||(13321-13377)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 26076603 - 26076355
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26076603 atacaagaagaataagaataaaaaatacagtgattatcccaagaacaggctaccctgactaaaaatatgagcaaccatgtttgcttgtctcctaacaaac 26076504  T
Q  101 ttcaccttgaagttggaatgtaaacttgtagtcattcaatttgaagatttcgggactact-nnnnnnncaccattttcaaacgctacctatgtccctaat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||        |||||||||||||  |||| ||||||||||||    
T  26076503 ttcaccttgaagttggaatgtaaacttgtagtcattcaatttgaagatcccgggactactaaaaaaaacaccattttcaaatactacatatgtccctaat 26076404  T
Q  200 tatatggccttttgagactattttgtctctttttataagaccctttgct 248  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  26076403 tatatggccttttgagacttttttgtctctttttataagcccctttgct 26076355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 8388404 - 8388286
Alignment:
Q  5 aagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttca 104  Q
    |||||| ||||||||||||||||||| || ||||||||||||| || |||||  ||||   ||||||||||||||||||||||||||||||||||||||     
T  8388404 aagaaggataagaataaaaaatacggtgactagcccaagaacaaaccaccctagctaagc-tatgagcaaccatgttcgcttgtctcctaacaaacttcc 8388306  T
Q  105 ccttgaagttggaatgtaaa 124  Q
    ||| ||||||||||||||||    
T  8388305 cctcgaagttggaatgtaaa 8388286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 25731130 - 25731008
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| ||||||||||||||||| | || |||||||||||||| |  ||||  |||||  ||||||||||||||||||||| |||||||||||||    
T  25731130 atacaagaaggataagaataaaaaatacagtgactagcccaagaacaggccgccctagctaaag-tatgagcaaccatgttcgcttatctcctaacaaac 25731032  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  25731031 ttcacctggaagttggaatgtaaa 25731008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 20205277 - 20205155
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||||||| |||||||||  || | ||||||||| || || ||||  |||||  |||||||||||||||||||||||||||||||||||    
T  20205277 atacaagaaggataagaatcaaaaatacgttgactggcccaagaataggctgccctagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaac 20205179  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  20205178 ttcacctagaagttggaatgtaaa 20205155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 22767140 - 22767260
Alignment:
Q  3 acaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaactt 102  Q
    ||||||||||||||||| |||||||||| || |||||||||||||  |  || |  |||||  |||||||||||||||||| ||||||||||||||||||    
T  22767140 acaagaagaataagaattaaaaatacggtgactagcccaagaacatgccgccttagctaaag-tatgagcaaccatgttcgtttgtctcctaacaaactt 22767238  T
Q  103 caccttgaagttggaatgtaaa 124  Q
    ||||| ||||||||||||||||    
T  22767239 cacctcgaagttggaatgtaaa 22767260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 27532771 - 27532893
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||| ||||| ||||||||||||||||| | ||||||||||||||||    |||||  |||||  ||| || ||||||||||||||||||||||||||||    
T  27532771 atacgagaaggataagaataaaaaatacagtgattagcccaagaacatgtcaccctagctaaag-tataagtaaccatgttcgcttgtctcctaacaaac 27532869  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  27532870 ttcacctcgaagttggaatgtaaa 27532893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 26597331 - 26597444
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||||||| ||| |||||| |||||| |||||||||| || ||||          ||||||||||||||||||||||||||||||||||    
T  26597331 atacaagaaggataagaatcaaatatacggtgattagtccaagaacaggctgccct----------atgagcaaccatgttcgcttgtctcctaacaaac 26597420  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  26597421 ttcacctcgaagttggaatgtaaa 26597444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 11375387 - 11375509
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||| ||| |||||||||| || |||||||||||||| |  ||||  |||||  |||||||||| ||||||||||||||| ||||||||    
T  11375387 atacaagaaggataaaaattaaaaatacggtgaatagcccaagaacaggccgccctagctaaag-tatgagcaactatgttcgcttgtctcttaacaaac 11375485  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| | ||||||||||||||    
T  11375486 ttcacctcggagttggaatgtaaa 11375509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 23075090 - 23075031
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaac 125  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23075090 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttaaagttggaatgtaaac 23075031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 27292755 - 27292634
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||  ||||||||||||||||||| || |||||||||||||   | ||||  |||||  |||||||||||||||||||||||||||| | ||||    
T  27292755 atacaagaatgataagaataaaaaatacggtgactagcccaagaacatg-tcccctagctaaag-tatgagcaaccatgttcgcttgtctcctgataaac 27292658  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||| ||||||||||||||||||    
T  27292657 ttcactttgaagttggaatgtaaa 27292634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 4268357 - 4268299
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4268357 tatgagcaaccatgttcgcttgtctcctaataaacttcaccttgaagttggaatgtaaa 4268299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 15988678 - 15988736
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||||||||||||  ||||||||||||||||||||||||| ||||||| ||||||||    
T  15988678 tatgagcaaccatgtctgcttgtctcctaacaaacttcacctcgaagttgtaatgtaaa 15988736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 30573546 - 30573647
Alignment:
Q  5 aagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttca 104  Q
    |||||| ||||||||||||||||||| || || ||||| |||||||  || |  || ||||||||| ||||||||||||||||||| |||||||| ||||    
T  30573546 aagaaggataagaataaaaaatacggtgactaacccaaaaacagaccgccttagct-aaaatatgaacaaccatgttcgcttgtcttctaacaaatttca 30573644  T
Q  105 cct 107  Q
    |||    
T  30573645 cct 30573647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 41940670 - 41940724
Alignment:
Q  70 agcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  41940670 agcaatcatgttctcttgtctcctaacaaacttcacctcgaagttggaatgtaaa 41940724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 32632833 - 32632715
Alignment:
Q  4 caagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttc 103  Q
    ||||||| ||||||||||||||||||| || |||||||||||||| |   |||  || ||| |||| ||||| ||||||||||||||| ||| |||| ||    
T  32632833 caagaaggataagaataaaaaatacggtgactagcccaagaacaggc-cgcctagct-aaagtatgggcaactatgttcgcttgtctcataataaacgtc 32632736  T
Q  104 accttgaagttggaatgtaaa 124  Q
    |||| |||||| |||||||||    
T  32632735 acctcgaagttagaatgtaaa 32632715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 12660574 - 12660515
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaac 125  Q
    ||||||||  ||||||||||||||||||||||||||||| || |||||| ||||||||||    
T  12660574 tatgagcagtcatgttcgcttgtctcctaacaaacttcagctcgaagttagaatgtaaac 12660515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 477921 - 478043
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||    ||||  ||||   |||||||||||||||||||||||||||||||||||    
T  477921 atacaagaaggataagaataaaaaatacggtgattagcccaagaacaggacgccctagctaagg-tatgagcaaccatgttcgcttgtctcctaacaaac 478019  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||||||||||||||||||||    
T  478020 ttcaccttgaagttggaatgtaaa 478043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 13415345 - 13415223
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||| |||||||||||||| || ||||||||||||||||  ||||  |||||  ||||||||||||||||||||||||||||| |||||    
T  13415345 atacaagaaggataaaaataaaaaatacggtgactagcccaagaacagaccgccctagctaaag-tatgagcaaccatgttcgcttgtctcctagcaaac 13415247  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||||||||||||||||||||    
T  13415246 ttcaccttgaagttggaatgtaaa 13415223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 33642629 - 33642751
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||  ||||||||||||||||||| || |||||||||||||||| |||||  |||||  ||||| |||||||||||||||||||||||||||||    
T  33642629 atacaagaatgataagaataaaaaatacggtgactagcccaagaacagaccaccctagctaaag-tatgaacaaccatgttcgcttgtctcctaacaaac 33642727  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||| ||||||||||||||||||||    
T  33642728 ttcgccttgaagttggaatgtaaa 33642751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 11870586 - 11870464
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    ||||||| || |||||||||||||||| || |||||||||||||||||  | ||||  |||||  |||||||||||||||||||||||||||||||||||    
T  11870586 atacaagtaggataagaataaaaaatatggtgattagcccaagaacaggttgccctagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaac 11870488  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| |||||| |||||||||    
T  11870487 ttcacctcgaagttagaatgtaaa 11870464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 40588595 - 40588717
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||| |||||||||||||| || |||||||||||||| |  ||||  |||||  |||| |||| |||||||||||||||||||||||||    
T  40588595 atacaagaaggataaaaataaaaaatacggtgactagcccaagaacaggccgccctagctaaag-tatgtgcaatcatgttcgcttgtctcctaacaaac 40588693  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  40588694 ttcacctcgaagttggaatgtaaa 40588717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 598106 - 598224
Alignment:
Q  5 aagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttca 104  Q
    |||||| ||||||||||||||||||| || ||||| ||||||||||  || |  |||||  |||||||||||||||||||||||||||||||||| ||||    
T  598106 aagaaggataagaataaaaaatacggtgactagcctaagaacagaccgccttagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaatttca 598204  T
Q  105 ccttgaagttggaatgtaaa 124  Q
    ||  ||||||| ||||||||    
T  598205 ccacgaagttgaaatgtaaa 598224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 23854190 - 23854132
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23854190 tatgagcaaccatgttcgcttgtctcctaacaaagttcaccttgaagttggaatgtaaa 23854132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 7127534 - 7127423
Alignment:
Q  12 ataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaa 111  Q
    |||||||| |||||| ||| || ||||||||||||||||  ||||  |||||  ||||||||| |||||||||||||||||||||||||||||| |  ||    
T  7127534 ataagaattaaaaatgcggtgactagcccaagaacagaccgccctagctaaag-tatgagcaatcatgttcgcttgtctcctaacaaacttcacatcaaa 7127436  T
Q  112 gttggaatgtaaa 124  Q
    |||||||||||||    
T  7127435 gttggaatgtaaa 7127423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 28315428 - 28315316
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||| ||||||||| ||||||| ||||||| ||||||||  ||||  |||||| |||||||||||||||| |||| ||| |||||||||    
T  28315428 atacaagaaggataaaaataaaaaa-acggcgactagcccaggaacagaccgccctagctaaaa-tatgagcaaccatgtttgcttatctgctaacaaac 28315331  T
Q  101 ttcaccttgaagttg 115  Q
    ||| ||| |||||||    
T  28315330 ttcgcctcgaagttg 28315316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 8450988 - 8451110
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| ||||| ||||||||||||| || ||||| ||||   | |  |||| |||| |  ||||| |||||||||||||||||||| ||||||||    
T  8450988 atacaagaaggataaggataaaaaatacggtgactagcctaagacagggccgccctaactagag-tatgaacaaccatgttcgcttgtctcntaacaaac 8451086  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| |||||| |||||||||    
T  8451087 ttcacctcgaagtttgaatgtaaa 8451110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 9497089 - 9496978
Alignment:
Q  12 ataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaa 111  Q
    ||||||||||||||||||| || ||| |||||||||| |  ||||  |||||  ||| |||||| ||||||||||||||||||| |||||||||  ||||    
T  9497089 ataagaataaaaaatacggtgactagtccaagaacaggccgccctagctaaag-tataagcaactatgttcgcttgtctcctaataaacttcactctgaa 9496991  T
Q  112 gttggaatgtaaa 124  Q
    ||||| |||||||    
T  9496990 gttgggatgtaaa 9496978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 3606613 - 3606726
Alignment:
Q  12 ataagaataaaaaatacggcgattagcccaagaacagact--accctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttcaccttg 109  Q
    |||||||| |||||||||| || ||||| |||||||| |   |||||  |||||  ||||| ||||||| |||||||||||||||||||||||||||| |    
T  3606613 ataagaattaaaaatacggtgactagcctaagaacaggcgtcaccctagctaaag-tatgaacaaccatattcgcttgtctcctaacaaacttcacctcg 3606711  T
Q  110 aagttggaatgtaaa 124  Q
    ||||| |||||||||    
T  3606712 aagttagaatgtaaa 3606726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 36194486 - 36194588
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||||||| |||||||||| || |||| ||||||||    |||||  |||||  ||||||||||||||||  |||||||||||||||||    
T  36194486 atacaagaaggataagaattaaaaatacggtgactagctcaagaacatgtcaccctagctaaac-tatgagcaaccatgttttcttgtctcctaacaaac 36194584  T
Q  101 ttca 104  Q
    ||||    
T  36194585 ttca 36194588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 37712331 - 37712273
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||||||||||||| || |||||| ||||| ||||||| | |||||| |||||||||    
T  37712331 tatgagcaaccatgtttgcatgtctcttaacagacttcacatcgaagttagaatgtaaa 37712273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 185521 - 185562
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcacct 107  Q
    ||||| |||| ||||||||||||||||||||||||| |||||    
T  185521 tatgaccaactatgttcgcttgtctcctaacaaactacacct 185562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 8670245 - 8670301
Alignment:
Q  68 tgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||||||||||| | ||||| |||||||||||| ||||  ||||||| |||||||    
T  8670245 tgagcaaccatgtttgtttgtcgcctaacaaactttacctcaaagttgggatgtaaa 8670301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 34707910 - 34707938
Alignment:
Q  1 atacaagaagaataagaataaaaaatacg 29  Q
    |||||||||||||||||||||||||||||    
T  34707910 atacaagaagaataagaataaaaaatacg 34707938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 2065175 - 2065053
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| ||||||||||||||||||| || |||||||||||||  |||||||  |||||  |||||||||||||||||| ||||||||||||||||    
T  2065175 atacaagaaggataagaataaaaaatacggtgactagcccaagaacatgctaccctagctaaag-tatgagcaaccatgttcgtttgtctcctaacaaac 2065077  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||||||||||| ||||||||    
T  2065076 ttcaccttgaagttgaaatgtaaa 2065053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 21321852 - 21321730
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| ||||||||||||||||||| || |||||||||||||| |  ||||  |||||  |||||||||||||| ||||||||||| ||| ||||    
T  21321852 atacaagaaggataagaataaaaaatacggtgactagcccaagaacaggccgccctagctaaag-tatgagcaaccatgatcgcttgtctcttaataaac 21321754  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||||||||||||||||||||    
T  21321753 ttcaccttgaagttggaatgtaaa 21321730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 32576913 - 32577035
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||||||  |||||||| | || |||||||||||||| || ||||  |||||  |||||||||||||||||||||||||||||||||||    
T  32576913 atacaagaaggataagaaacaaaaatacagtgactagcccaagaacaggctgccctagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaac 32577011  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  32577012 ttcacctcgaagttggaatgtaaa 32577035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 37245717 - 37245839
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||||| | |||||| ||| || ||||||||||||||||  ||||  |||||  |||||||||||||||||| ||||||||||||||||    
T  37245717 atacaagaaggataagagttaaaaatgcggtgactagcccaagaacagaccgccctagctaaag-tatgagcaaccatgttcgattgtctcctaacaaac 37245815  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  37245816 ttcacctcgaagttggaatgtaaa 37245839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 49951635 - 49951513
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||| ||| |||||||||||||||||   || |||||||||||||| |  ||||  |||||  |||||||||||||||||||||||||||||||||||    
T  49951635 atacaataaggataagaataaaaaatacaatgactagcccaagaacaggccgccctagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaac 49951537  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  49951536 ttcacctcgaagttggaatgtaaa 49951513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 23095525 - 23095414
Alignment:
Q  12 ataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaa 111  Q
    |||||||| |||||| ||| || |||||||||||||| | |||||  |||||| |||||| || |||||||||||||||||||||||||||||||| |||    
T  23095525 ataagaattaaaaatgcggtgactagcccaagaacaggccaccctagctaaaa-tatgagtaatcatgttcgcttgtctcctaacaaacttcacctcgaa 23095427  T
Q  112 gttggaatgtaaa 124  Q
    |||||||||||||    
T  23095426 gttggaatgtaaa 23095414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 18442012 - 18442134
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||| ||| |||||||||| || |||||||||||||| |  ||||  |||||| ||||||||||||| |||| ||||||| ||||||||    
T  18442012 atacaagaaggataaaaattaaaaatacggtgactagcccaagaacaggccgccctagctaaaa-tatgagcaaccattttcgtttgtctcataacaaac 18442110  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||||||||||||||| ||||    
T  18442111 ttcaccttgaagttggaatataaa 18442134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 28426505 - 28426383
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||||||| |||||||| | || |||||||||| ||| | ||| |  |||||  |||||||||||||||||||||||||||||||||||    
T  28426505 atacaagaaggataagaattaaaaatacagtgactagcccaagagcaggccaccttagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaac 28426407  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||| ||| ||||||||||||||||    
T  28426406 ttctcctcgaagttggaatgtaaa 28426383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 49119265 - 49119387
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||||||| |||||||| | || |||||||||| ||| | ||| |  |||||  |||||||||||||||||||||||||||||||||||    
T  49119265 atacaagaaggataagaattaaaaatacagtgactagcccaagagcaggccaccttagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaac 49119363  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||| ||| ||||||||||||||||    
T  49119364 ttctcctcgaagttggaatgtaaa 49119387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 56065955 - 56065833
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||||||||||||||||||||||| || ||||||||  | || |  ||||  ||||   |||||||||||||||||||||||||||||||||||    
T  56065955 atacaagaagaataagaataaaaaatacggtgactagcccaaatataggccgccctagctaagc-tatgagcaaccatgttcgcttgtctcctaacaaac 56065857  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    |||| || ||||||||||||||||    
T  56065856 ttcatctcgaagttggaatgtaaa 56065833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 8754328 - 8754450
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    ||||||||| |||||||||||||||||||| || || || ||||||||||  | ||  |||||  || ||||||||||||||||||||||| ||||||||    
T  8754328 atacaagaaaaataagaataaaaaatacggtgactatccaaagaacagaccgctctatctaaag-tacgagcaaccatgttcgcttgtctcataacaaac 8754426  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    |||| || ||||||||||||||||    
T  8754427 ttcatctcgaagttggaatgtaaa 8754450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 26422467 - 26422589
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    ||||||||||||||||||| |||||||||| || ||||||||||| || |  || | | | ||| |||||||||||||||| |  |||||||||||||||    
T  26422467 atacaagaagaataagaattaaaaatacggtgactagcccaagaataggccgccgt-agttaaagtatgagcaaccatgtttgtctgtctcctaacaaac 26422565  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  26422566 ttcacctcgaagttggaatgtaaa 26422589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 51259394 - 51259516
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||| ||| |||| |||||||||||||| || |||||||| || || |  ||||  ||||   |||||||||||||||||||||||||||||||||||    
T  51259394 atacaaaaaggataataataaaaaatacggtgactagcccaaaaataggccgccctagctaagc-tatgagcaaccatgttcgcttgtctcctaacaaac 51259492  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  51259493 ttcacctcgaagttggaatgtaaa 51259516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 51734837 - 51734959
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||| ||| |||||||| ||| ||||||  |||||||||||||||| |  ||||  |||||  ||||||||||||||||| |||||| ||||||||||    
T  51734837 atacaaaaaggataagaatcaaagatacggtaattagcccaagaacaggccgccctagctaaag-tatgagcaaccatgttcacttgtcacctaacaaac 51734935  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  51734936 ttcacctcgaagttggaatgtaaa 51734959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 41835176 - 41835298
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||  ||||||||||||||||  | || |||||||||||||| |  ||||  |||||  |||||| ||||||||||||||||||||||||||||    
T  41835176 atacaagaaagataagaataaaaaatatagtgactagcccaagaacaggccgccctatctaaac-tatgaggaaccatgttcgcttgtctcctaacaaac 41835274  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    |||| || ||| ||||||||||||    
T  41835275 ttcatctcgaaattggaatgtaaa 41835298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 44936011 - 44936069
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  44936011 tatgagcaaccatgttcgcttgtctgctaacaaacttcacctcgaagttggaatgtaaa 44936069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 29655542 - 29655653
Alignment:
Q  12 ataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaa 111  Q
    ||||||||||||||| ||| |||||||| ||||||||    ||||  |||||  ||||||||||||||||||||||||||||||||||||||| || |||    
T  29655542 ataagaataaaaaatgcggtgattagccaaagaacaggtcgccctagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaa 29655640  T
Q  112 gttggaatgtaaa 124  Q
    || | ||||||||    
T  29655641 gtggaaatgtaaa 29655653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 24989799 - 24989921
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||| ||||||||||||||||| ||||| ||||||| ||| |||| |  |||||   ||||  ||| ||||||| |||||| ||||||| ||||||||    
T  24989799 atacaaaaagaataagaataaaaagtacggtgattagctcaaaaacatatcaccctagataaag-tataagcaaccgtgttcgtttgtctcttaacaaac 24989897  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  24989898 ttcacctcgaagttggaatgtaaa 24989921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 28537716 - 28537773
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaa 123  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||    
T  28537716 tatgagcaaccatgttcgcttgtcttctaccaaacttcacctcgaagttggaatgtaa 28537773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 43840201 - 43840307
Alignment:
Q  12 ataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaa 111  Q
    ||||||||||||||||||  |||||   |||||||||||| |||| | | ||| ||||| |||||||||||| |||| ||||||| |||||||| || ||    
T  43840201 ataagaataaaaaatacgatgattaattcaagaacagactgccct-agttaaagtatgaacaaccatgttcgtttgtttcctaaccaacttcactttaaa 43840299  T
Q  112 gttggaat 119  Q
    ||||||||    
T  43840300 gttggaat 43840307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 47226263 - 47226317
Alignment:
Q  70 agcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    ||||| |||||| ||||||| |||||||  |||||| ||||||||||||||||||    
T  47226263 agcaatcatgtttgcttgtcgcctaacattcttcactttgaagttggaatgtaaa 47226317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 47226208 - 47226241
Alignment:
Q  12 ataagaataaaaaatacggcgattagcccaagaa 45  Q
    ||||||||||||||||||| ||||||||||||||    
T  47226208 ataagaataaaaaatacggtgattagcccaagaa 47226241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 40727221 - 40727169
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaa 118  Q
    |||||||||| ||| ||||||| | |||||||||||||||||  |||||||||    
T  40727221 tatgagcaactatgctcgcttgacgcctaacaaacttcacctcaaagttggaa 40727169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 55735248 - 55735212
Alignment:
Q  85 ttgtctcctaacaaacttcaccttgaagttggaatgt 121  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  55735248 ttgtctcctaacaaacttcacctcgaagttgaaatgt 55735212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 16732255 - 16732133
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||| ||| ||||||||||||||||||| || |||||||||||||| |  ||||  |||||  |||||||||||||||||||||||||||||||||||    
T  16732255 atacaaaaaggataagaataaaaaatacggtgactagcccaagaacagtccgccctagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaac 16732157  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  16732156 ttcacctcgaagttggaatgtaaa 16732133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 17710389 - 17710267
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||| ||| ||||||||||||||||||| || |||||||||||||| |  ||||  |||||  |||||||||||||||||||||||||||||||||||    
T  17710389 atacaaaaaggataagaataaaaaatacggtgactagcccaagaacagtccgccctagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaac 17710291  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  17710290 ttcacctcgaagttggaatgtaaa 17710267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 29200821 - 29200942
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    ||||||||||| |||||||||||||||| | || ||||||||||||||||  ||||  |||||  |||||||||||||||||| ||||||||||||||||    
T  29200821 atacaagaaga-taagaataaaaaatacagtgactagcccaagaacagaccgccctagctaaag-tatgagcaaccatgttcgtttgtctcctaacaaac 29200918  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  29200919 ttcacctcgaagttggaatgtaaa 29200942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 24139333 - 24139221
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| ||||||||||||||| ||| || |||||||||||||| |  ||||  |||||  |||||||||||||||||||||||||||||||||||    
T  24139333 atacaagaaggataagaataaaaaatgcggtgactagcccaagaacaggccgccctagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaac 24139235  T
Q  101 ttcaccttgaagtt 114  Q
    ||||||||||||||    
T  24139234 ttcaccttgaagtt 24139221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 33224425 - 33224547
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||  |||||||| |||||||||| || |||||||||||||| || ||||   |||   ||||||||| |||||||||||||||||||||||||    
T  33224425 atacaagaatgataagaatcaaaaatacggtgactagcccaagaacaggctgccctagataagt-tatgagcaatcatgttcgcttgtctcctaacaaac 33224523  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||||||||||||||||||||    
T  33224524 ttcaccttgaagttggaatgtaaa 33224547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 44481409 - 44481287
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||| | |||||||||||||||| || || |||||||||||||| |  ||||  |||||  |||||||||||||||||||||||||||||||||||    
T  44481409 atacaagatggataagaataaaaaatatggtgactagcccaagaacaggccgccctagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaac 44481311  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||| ||||||||    
T  44481310 ttcacctcgaagttgaaatgtaaa 44481287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 24251750 - 24251639
Alignment:
Q  12 ataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaa 111  Q
    |||||||| |||||||||| || |||| ||||||||| |  ||||  |||||  |||||||||||||||||||||||||||||||||||||||||| |||    
T  24251750 ataagaattaaaaatacggtgactagctcaagaacaggccgccctagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaa 24251652  T
Q  112 gttggaatgtaaa 124  Q
    |||||||||||||    
T  24251651 gttggaatgtaaa 24251639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 30493475 - 30493597
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| ||||||||||||||||||| || ||||||||||||||||  ||||  || ||| ||||| |||||||||| | ||||||||||||||||    
T  30493475 atacaagaaggataagaataaaaaatacggtgactagcccaagaacagaccgccctagct-aaagtatgaacaaccatgtttggttgtctcctaacaaac 30493573  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    |||||  |||||||| ||||||||    
T  30493574 ttcactatgaagttgaaatgtaaa 30493597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 16098752 - 16098690
Alignment:
Q  62 aaaatatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16098752 aaaatatgagcaaccatgttcgcttgtctcataacaaacttcaccttgaagttggaatgtaaa 16098690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 3601971 - 3601852
Alignment:
Q  4 caagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttc 103  Q
    ||||||| ||||||||||||||||||| ||  ||||||| ||||| |  ||||  |||||  |||||||||||||||||| |||||||||||||||||||    
T  3601971 caagaaggataagaataaaaaatacggtgacaagcccaacaacagcccgccctagctaaac-tatgagcaaccatgttcgattgtctcctaacaaacttc 3601873  T
Q  104 accttgaagttggaatgtaaa 124  Q
    |||| ||| || |||||||||    
T  3601872 acctcgaatttagaatgtaaa 3601852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 30824360 - 30824481
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||  |||||||||||||||| || || |||||||||||||||| |||   | | ||  ||||||||||||||||||||| |||||||||||||    
T  30824360 atacaagaaagataagaataaaaaatatggtgactagcccaagaacagaccacct--aattaaggtatgagcaaccatgttcgcttatctcctaacaaac 30824457  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||| |  |||||||||||||||    
T  30824458 ttcacttcaaagttggaatgtaaa 30824481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 3275353 - 3275234
Alignment:
Q  5 aagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttca 104  Q
    |||||| |||| ||| |||||||||| || ||||| |||||||| |  ||||  || ||  ||||| |||||||||||||||||||| ||||||||||||    
T  3275353 aagaaggataaaaattaaaaatacggtgactagcctaagaacaggccgccctagcttaagctatgatcaaccatgttcgcttgtctcttaacaaacttca 3275254  T
Q  105 ccttgaagttggaatgtaaa 124  Q
    ||| ||||||||||||||||    
T  3275253 cctcgaagttggaatgtaaa 3275234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 9328531 - 9328589
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  9328531 tatgagcaaccatgttcgcttgtctcctaacaaacttcacatcgaagttggaatgtaaa 9328589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 22289499 - 22289441
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  22289499 tatgagcaaccatgttcgcttgtctcctaacaaacatcacctcgaagttggaatgtaaa 22289441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 47580196 - 47580075
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| || |||||||||| ||||| || |||||||||||||| |   | | ||| || | |||||||||||||||||||||||||||| |||||    
T  47580196 atacaagaaggatgagaataaaaa-tacggtgactagcccaagaacaggccgtcttaactgaaga-atgagcaaccatgttcgcttgtctcctaccaaac 47580099  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||| ||||    
T  47580098 ttcacctcgaagttggaatataaa 47580075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 17877720 - 17877598
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||| |||||||||||||| || |||||||| ||||  |   |||  |||||  |||||||||||||| ||||||||||| ||||||||    
T  17877720 atacaagaaggataaaaataaaaaatacggtgactagcccaataacatgccgtcctacctaaag-tatgagcaaccatggtcgcttgtctcataacaaac 17877622  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||| ||| ||||||||    
T  17877621 ttcacctcgaaattgaaatgtaaa 17877598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 1581939 - 1581816
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaacc-atgttcgcttgtctcctaacaaa 99  Q
    |||||||||| ||||||||||||||||||| || |||||||| || |  |  || |  |||||  |||||||| || |||||||||||||||||||||||    
T  1581939 atacaagaaggataagaataaaaaatacggtgactagcccaaaaataagcctccttagctaaac-tatgagcaccccatgttcgcttgtctcctaacaaa 1581841  T
Q  100 cttcaccttgaagttggaatgtaaa 124  Q
    |||||| | ||||||| ||||||||    
T  1581840 cttcacatcgaagttgaaatgtaaa 1581816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 35013814 - 35013759
Alignment:
Q  69 gagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||| ||||| || ||||||||||||| |||||||| |||||| ||||||||||||    
T  35013814 gagcgaccatatttgcttgtctcctaataaacttcaacttgaaattggaatgtaaa 35013759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 35030583 - 35030641
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||||||  ||||||||||||||| |  ||||||||||||  |||||||||||||||    
T  35030583 tatgagcaattatgttcgcttgtctcttcgcaaacttcacctcaaagttggaatgtaaa 35030641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 6056306 - 6056358
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaa 118  Q
    ||||| |||||||||||||||| | || ||||||||||||||  |||||||||    
T  6056306 tatgaacaaccatgttcgcttgacgcccaacaaacttcacctcaaagttggaa 6056358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 11731534 - 11731656
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    ||||||||||||||||||||||||||| || || |||||||||| ||| || ||||  |||||  |||||||||||||||||||||| ||||||||||||    
T  11731534 atacaagaagaataagaataaaaaatatggtgactagcccaagagcaggctgccctagctaaag-tatgagcaaccatgttcgcttgcctcctaacaaac 11731632  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  11731633 ttcacctcgaagttggaatgtaaa 11731656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 14680484 - 14680362
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| || | |||||||||||||| || |||||  ||||||| |  |||| | | ||| ||||||||||||||||||| |||||||||||||||    
T  14680484 atacaagaaggatgaaaataaaaaatacggtgactagcctgagaacaggccgccct-agttaaagtatgagcaaccatgttcgcatgtctcctaacaaac 14680386  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  14680385 ttcacctcgaagttggaatgtaaa 14680362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 34104330 - 34104452
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||| ||||| ||||||||||||||||||| || |||||||||||||  |  || |  ||||   |||||||||||||||| ||||||||||||||||||    
T  34104330 atacgagaaggataagaataaaaaatacggtgactagcccaagaacatgccgccatagctaagc-tatgagcaaccatgtttgcttgtctcctaacaaac 34104428  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| |||||| |||||||||    
T  34104429 ttcacctcgaagttcgaatgtaaa 34104452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 15053044 - 15053162
Alignment:
Q  5 aagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttca 104  Q
    |||||| |||||||| |||||||||| ||||| || | |||||| || ||||  |||||  ||||||||| |||||| |||||||| |||||||||||||    
T  15053044 aagaaggataagaattaaaaatacggtgattaacctaggaacaggctgccctagctaaag-tatgagcaatcatgtttgcttgtcttctaacaaacttca 15053142  T
Q  105 ccttgaagttggaatgtaaa 124  Q
    ||| ||| ||||||||||||    
T  15053143 cctcgaaattggaatgtaaa 15053162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 15605859 - 15605981
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||||||||| ||||| || || ||||||||||| |  |  ||||  |||||   |||||||||||||||||||||||| ||||||||     
T  15605859 atacaagaaggataagaataataaatatggtgactagcccaagaataagccgccctagctaaagc-atgagcaaccatgttcgcttgtctgctaacaaaa 15605957  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  15605958 ttcacctcgaagttggaatgtaaa 15605981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 21944493 - 21944615
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| ||||||||||||||||||| || |||| |||||||   || | || ||||||  |||||||||| ||| ||||||||||  ||||||||    
T  21944493 atacaagaaggataagaataaaaaatacggtgactagcacaagaacctgctgctctaactaaag-tatgagcaacaatgatcgcttgtcttttaacaaac 21944591  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||| | ||||||||||| ||||    
T  21944592 ttcacatcgaagttggaatataaa 21944615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 27443251 - 27443141
Alignment:
Q  5 aagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttca 104  Q
    |||||| ||| |||| |||||||| | || ||||||||||||||||  ||||  ||||   ||||||||||||||||||||| |||||||||||||||||    
T  27443251 aagaaggatatgaatcaaaaatacagtgactagcccaagaacagaccgccctagctaagc-tatgagcaaccatgttcgcttctctcctaacaaacttca 27443153  T
Q  105 ccttgaagttgg 116  Q
    |||  |||||||    
T  27443152 cctcaaagttgg 27443141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 3100494 - 3100446
Alignment:
Q  76 catgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||    
T  3100494 catgttcgcttgtctcctaacaaacttcacctcaaagttggaatgtaaa 3100446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 29367972 - 29368043
Alignment:
Q  53 ccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||| ||||||| |||||  ||| |||||||||||| ||||||||||||| ||||||||||||||| |||||    
T  29367972 ccctaactaaaagtatgaataactatgttcgcttgtttcctaacaaactttaccttgaagttggaaggtaaa 29368043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 28107397 - 28107339
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||||||||||||| | ||||||||||||||||| || || ||||||||||||||||    
T  28107397 tatgagcaaccatgtttggttgtctcctaacaaactacagctcgaagttggaatgtaaa 28107339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 19690803 - 19690866
Alignment:
Q  61 aaaaatatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    ||||| |||||||| ||||||||||||| ||||||||||||||||||  |||||  ||||||||    
T  19690803 aaaaacatgagcaatcatgttcgcttgtttcctaacaaacttcacctcaaagtttaaatgtaaa 19690866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 5542625 - 5542589
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaactt 102  Q
    |||||||||||||||||||||||| |||| |||||||    
T  5542625 tatgagcaaccatgttcgcttgtcgcctagcaaactt 5542589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 33487843 - 33487895
Alignment:
Q  191 gtccctaattatatggcctttt-gagactattttgtctctttttataagaccc 242  Q
    ||||||||||||| | |||||| |||| | |||||||||||||||||||||||    
T  33487843 gtccctaattataagacctttttgagaattttttgtctctttttataagaccc 33487895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 53497354 - 53497232
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||| |||||||||||||| || |||||||||||||| || ||||  |||||  |||||||| ||||||||||||||||||||| ||||    
T  53497354 atacaagaaggataataataaaaaatacggtgactagcccaagaacaggctgccctagctaaag-tatgagcagccatgttcgcttgtctcctaataaac 53497256  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||||||||||||||||||||    
T  53497255 ttcaccttgaagttggaatgtaaa 53497232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 27608768 - 27608890
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| ||||||||||||||||||| || |||||||||||||| |  | ||  ||||   |||||||||||||||||||||||||||||||||||    
T  27608768 atacaagaaggataagaataaaaaatacggtgactagcccaagaacaggccgctctagctaagc-tatgagcaaccatgttcgcttgtctcctaacaaac 27608866  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    |||| || ||||||||||||||||    
T  27608867 ttcagctcgaagttggaatgtaaa 27608890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 34497237 - 34497359
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    ||||| |||| |||| |||||||||||||| || |||||||||||||| |  ||||  ||||   |||||||||||||||||||||||||||||||||||    
T  34497237 atacatgaaggataaaaataaaaaatacggtgactagcccaagaacaggccgccctagctaagc-tatgagcaaccatgttcgcttgtctcctaacaaac 34497335  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  34497336 ttcacctcgaagttggaatgtaaa 34497359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 2121403 - 2121281
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||  |||||||||||||||||||  | || |||||||||||||  |||| ||||||  |||||||||||||||||||||||||||||||||||    
T  2121403 atacaagaatgataagaataaaaaatacggtaactaacccaagaacagaccgccctaactaaag-tatgagcaaccatgttcgcttgtctcctaacaaac 2121305  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    || |||| |||||||  |||||||    
T  2121304 tttacctcgaagttgagatgtaaa 2121281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 42340142 - 42340264
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||| ||| |||||||||| || ||||| |||||||| |  ||||  |||||  | |||||||||||||||||||||||||||||||||    
T  42340142 atacaagaaggataaaaattaaaaatacggtgactagccaaagaacaggccgccctatctaaag-tgtgagcaaccatgttcgcttgtctcctaacaaac 42340240  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  42340241 ttcacctcgaagttggaatgtaaa 42340264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 647055 - 647157
Alignment:
Q  21 aaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatg 120  Q
    |||||||||| |||||| |||||||||| |  |||| ||||||  |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||    
T  647055 aaaaatacggtgattagtccaagaacaggccgccctaactaaag-tatgagcaaccatgttcgtttgtctcctaacaaatttcacctcgaagttggaatg 647153  T
Q  121 taaa 124  Q
    ||||    
T  647154 taaa 647157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 31341594 - 31341712
Alignment:
Q  5 aagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttca 104  Q
    |||||| |||||||| |||||||||| || |||||||||||| | || |||| |||||   |||||||||||||||  | ||||||||||| ||||||||    
T  31341594 aagaaggataagaatcaaaaatacggtgactagcccaagaaccggctgccctaactaagg-tatgagcaaccatgtcagtttgtctcctaataaacttca 31341692  T
Q  105 ccttgaagttggaatgtaaa 124  Q
    ||||||||||||||||||||    
T  31341693 ccttgaagttggaatgtaaa 31341712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 55199769 - 55199711
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  55199769 tatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaa 55199711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 55213643 - 55213525
Alignment:
Q  5 aagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttca 104  Q
    |||||||||||||||||||||||| | || |||||||||||| | |  |||| | | ||| ||| ||||||||||||||||| |||||||||||| ||||    
T  55213643 aagaagaataagaataaaaaatacagtgactagcccaagaaccggccgccct-agttaaagtataagcaaccatgttcgcttttctcctaacaaatttca 55213545  T
Q  105 ccttgaagttggaatgtaaa 124  Q
    ||| |||||||||| |||||    
T  55213544 cctcgaagttggaacgtaaa 55213525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 26047006 - 26046888
Alignment:
Q  5 aagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttca 104  Q
    |||||| |||||||| |||||||||| || ||||||||||| |  |  ||||  |||||  ||||||||||||||||||||||||||||||||||| |||    
T  26047006 aagaaggataagaattaaaaatacggtgactagcccaagaataagccgccctagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaacgtca 26046908  T
Q  105 ccttgaagttggaatgtaaa 124  Q
    |||  ||||| |||||||||    
T  26046907 cctcaaagttagaatgtaaa 26046888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 27747614 - 27747672
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  27747614 tatgagcaactatgttcgcttgtctcttaacaaacttcacctcgaagttggaatgtaaa 27747672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 2615789 - 2615683
Alignment:
Q  17 aataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttgg 116  Q
    |||||||| ||||| || ||||||||||||||    |||| | | ||| |||||||||||||||||| |||||||||||||||||||| || || |||||    
T  2615789 aataaaaattacggtgactagcccaagaacaggtcgccct-agttaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcatctcgaggttgg 2615691  T
Q  117 aatgtaaa 124  Q
    ||||||||    
T  2615690 aatgtaaa 2615683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 48227690 - 48227568
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||  |||| ||||||||||| ||||| || ||||||||||     ||||  |||||  |||||| |||||| || |||||||||||||||||     
T  48227690 atacaagaaagataaaaataaaaaatatggcgaataacccaagaacaagtcgccctagctaaag-tatgaggaaccatatttgcttgtctcctaacaaat 48227592  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  48227591 ttcacctcgaagttggaatgtaaa 48227568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 1702818 - 1702876
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||| || ||| ||||||||||| ||||||||||||||||||||||| |||||||||    
T  1702818 tatgagtaatcatattcgcttgtcttctaacaaacttcaccttgaagttcgaatgtaaa 1702876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 11020046 - 11020167
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    ||||||||||| |||||||||||||||| | || ||||||||| | ||  |  |||  |||||| |||||  |||||||||||||||||||| |||||||    
T  11020046 atacaagaaga-taagaataaaaaatacagtgactagcccaaggataggttgtcctagctaaaa-tatgattaaccatgttcgcttgtctccaaacaaac 11020143  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||| | || |||| ||||||||    
T  11020144 ttcacatcgaggttgaaatgtaaa 11020167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 19117585 - 19117703
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||||||| |||||||||| || ||||| |||||||| |   |||  ||||   |||||||||| |||||||  |||||||||||||||    
T  19117585 atacaagaaggataagaatcaaaaatacggtgactagcctaagaacaggccgacctagctaagc-tatgagcaactatgttcgactgtctcctaacaaac 19117683  T
Q  101 ttcaccttgaagttggaatg 120  Q
    |||||||  || ||||||||    
T  19117684 ttcacctcaaatttggaatg 19117703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 49525125 - 49525181
Alignment:
Q  68 tgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||| ||||||||||||||| |||||||||||| ||||  || ||||||||||||    
T  49525125 tgagcagccatgttcgcttgtcgcctaacaaactttacctcaaaattggaatgtaaa 49525181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 26806405 - 26806353
Alignment:
Q  191 gtccctaattatatg-gccttttgagactattttgtctctttttataagaccc 242  Q
    ||||||||||||| | ||||||||||| | |||||||| ||||||||||||||    
T  26806405 gtccctaattataagagccttttgagatttttttgtctttttttataagaccc 26806353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 48949589 - 48949711
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| ||||||||||||||||||| || |||||||||||||| || ||||  ||||   |||||| ||||||||||||||||||||||||||||    
T  48949589 atacaagaaggataagaataaaaaatacggtgactagcccaagaacaggctgccctagctaagc-tatgagtaaccatgttcgcttgtctcctaacaaac 48949687  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  48949688 ttcacctcgaagttggaatgtaaa 48949711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 4395480 - 4395358
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| ||||||||||||||||||| || |||||||||||||| |  ||||  |||||  |||||||||||||||||||||||||||||||||||    
T  4395480 atacaagaaggataagaataaaaaatacggtgactagcccaagaacaggccgccctagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaac 4395382  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    |||||||  |||||| ||||||||    
T  4395381 ttcacctcaaagttgaaatgtaaa 4395358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 5609661 - 5609539
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| ||||||||||||||||| | || |||||||||||||  |  ||||  ||||   |||||||||||||||||||||||||||||||||||    
T  5609661 atacaagaaggataagaataaaaaatacagtgactagcccaagaacatgccgccctagctaatg-tatgagcaaccatgttcgcttgtctcctaacaaac 5609563  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  5609562 ttcacctcgaagttggaatgtaaa 5609539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 51113637 - 51113518
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||||||||||||||||||||||| || || |||||||||||    ||||  ||||   ||||||||||||||||||||| |||||||||||||    
T  51113637 atacaagaagaataagaataaaaaatacggtgactaacccaagaacaggtcgccctagctaagc-tatgagcaaccatgttcgcttctctcctaacaaac 51113539  T
Q  101 ttcaccttgaagttggaatgt 121  Q
    ||||||| |||||||||||||    
T  51113538 ttcacctcgaagttggaatgt 51113518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 44527556 - 44527453
Alignment:
Q  20 aaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaat 119  Q
    ||||||||||| ||||| ||||||||||| |  |||| | | ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  44527556 aaaaaatacggtgattaacccaagaacaggccgccct-agttaaagtatgagcagccatgttcgcttgtctcctaataaacttcaccttgaagttggaat 44527458  T
Q  120 gtaaa 124  Q
    |||||    
T  44527457 gtaaa 44527453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 44603065 - 44602952
Alignment:
Q  5 aagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttca 104  Q
    |||||| |||||||||||||||| || || |||||||||||||| |  ||||      || ||||||| |||||||||||||||| ||||||||||||||    
T  44603065 aagaaggataagaataaaaaatatggtgactagcccaagaacaggccgccct------aagtatgagccaccatgttcgcttgtcccctaacaaacttca 44602972  T
Q  105 ccttgaagttggaatgtaaa 124  Q
    ||| ||||||||||||||||    
T  44602971 cctcgaagttggaatgtaaa 44602952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 25682909 - 25682851
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  25682909 tatgagcaaccatgctcgcttgtctcctaacaaacttcaccttgaagttagaatgtaaa 25682851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 16816673 - 16816784
Alignment:
Q  12 ataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaa 111  Q
    ||||| ||||||||||||| || ||||||||||| |     |||| ||||||  ||||||||||||||||| ||| ||||||||||||||||||||| ||    
T  16816673 ataaggataaaaaatacggtgactagcccaagaataagtcgccctaactaaag-tatgagcaaccatgttctcttctctcctaacaaacttcaccttaaa 16816771  T
Q  112 gttggaatgtaaa 124  Q
    |||||||||||||    
T  16816772 gttggaatgtaaa 16816784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 21031471 - 21031349
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||| ||||| |||||||||||| ||||||  | || ||||| ||||| || ||||| |||||  ||||||||| |||||||||||||||||||| ||||    
T  21031471 atacgagaaggataagaataaaacatacggtaactaacccaaaaacaggctgccctggctaaac-tatgagcaatcatgttcgcttgtctcctaaaaaac 21031373  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| |||||| | |||||||    
T  21031372 ttcacctcgaagttaggatgtaaa 21031349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 17371706 - 17371648
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  17371706 tatgagcgaccatattcgcttgtctcctaataaacttcaccttgaagttggaatgtaaa 17371648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 2885549 - 2885427
Alignment:
Q  1 atacaagaagaataagaataaaaaa-tacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaa 99  Q
    |||||||||  |||||||||||||| ||||| || ||||||||||||||    ||||  |||||  |||||||||| |||||||||||| ||||||||||    
T  2885549 atacaagaatgataagaataaaaaaatacggtgactagcccaagaacaggtcgccctagctaaag-tatgagcaac-atgttcgcttgtatcctaacaaa 2885452  T
Q  100 cttcaccttgaagttggaatgtaaa 124  Q
    |||||||  ||||||| ||||||||    
T  2885451 cttcaccacgaagttgaaatgtaaa 2885427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 36733944 - 36733896
Alignment:
Q  76 catgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  36733944 catgttcgcttgtctcgtaacaaacttcacctcgaagttggaatgtaaa 36733896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 5594356 - 5594266
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcc 92  Q
    |||||||||| ||||||||||||||||||| |||||| |||||||||  |   ||| | | ||| |||||||||||||||||||||||||||    
T  5594356 atacaagaaggataagaataaaaaatacggtgattagtccaagaacatgccgtcct-agttaaagtatgagcaaccatgttcgcttgtctcc 5594266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 14485332 - 14485210
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||||||||||||||| |   | |||| ||||||||  |  ||||  |||||  |||||||||| ||||||| |||||||||||  |||    
T  14485332 atacaagaaggataagaataaaaaatatgattactagctcaagaacaagccgccctagctaaag-tatgagcaactatgttcgtttgtctcctaatgaac 14485234  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    |||||||| |||||||||||||||    
T  14485233 ttcaccttaaagttggaatgtaaa 14485210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 23163409 - 23163357
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaa 118  Q
    ||||||||||||||||||||||||| ||||||||||| | || ||||||||||    
T  23163409 tatgagcaaccatgttcgcttgtcttctaacaaactttatctcgaagttggaa 23163357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 24538750 - 24538687
Alignment:
Q  61 aaaaatatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||||||||  ||||| |||||||||    
T  24538750 aaaagtatgagcaatcatgttcgcttgtttcctaacgaacttcacctcaaagttagaatgtaaa 24538687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 48166482 - 48166427
Alignment:
Q  69 gagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||| |||||||| |||| ||||||||||||||| |||||||||| ||||||||    
T  48166482 gagcaatcatgttcgtttgtttcctaacaaacttcatcttgaagttgaaatgtaaa 48166427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 4898549 - 4898607
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    ||||||||| ||| |||| |||||||||||||||||| || | ||||||| ||||||||    
T  4898549 tatgagcaatcatattcgtttgtctcctaacaaactttacatcgaagttgaaatgtaaa 4898607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 52109711 - 52109653
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    ||||| |||| ||||| | ||||||| |||||||||| ||||||||||| |||||||||    
T  52109711 tatgaacaactatgtttgtttgtctcataacaaactttaccttgaagttagaatgtaaa 52109653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 38679050 - 38679083
Alignment:
Q  91 cctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    ||||| ||||||||||||||||||||||||||||    
T  38679050 cctaataaacttcaccttgaagttggaatgtaaa 38679083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 88881 - 88759
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| ||||||||||||||||||| || |||||||||||||| |  ||||  |||||  ||||||||||||||||||||||||||| || ||||    
T  88881 atacaagaaggataagaataaaaaatacggtgactagcccaagaacaggccgccctagctaaag-tatgagcaaccatgttcgcttgtctccaaataaac 88783  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||| ||||||||||||||||||    
T  88782 ttcacgttgaagttggaatgtaaa 88759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 34695769 - 34695891
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| ||||||||||||||| ||| ||  ||||||||||||  |  ||||  |||||  |||||||||||||||||||||||||||||||||||    
T  34695769 atacaagaaggataagaataaaaaatgcggtgacaagcccaagaacaagccgccctagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaac 34695867  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  34695868 ttcacctcgaagttggaatgtaaa 34695891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 34718181 - 34718303
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| ||||||||||||||| ||| ||  ||||||||||||  |  ||||  |||||  |||||||||||||||||||||||||||||||||||    
T  34718181 atacaagaaggataagaataaaaaatgcggtgacaagcccaagaacaagccgccctagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaac 34718279  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  34718280 ttcacctcgaagttggaatgtaaa 34718303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 9710277 - 9710155
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||||||  ||||||||||  | ||||||||||||||||   | |  |||||  |||||||||||||||||||||||||||||||||||    
T  9710277 atacaagaaggataagaactaaaaatacggttactagcccaagaacagaccgtcttagctaaag-tatgagcaaccatgttcgcttgtctcctaacaaac 9710179  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  9710178 ttcacctcgaagttggaatgtaaa 9710155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 12130503 - 12130625
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||||||||||||||||||  | |||| |||||| || |   |||  |||||  |||||||||||||||||||||||||| ||||||||    
T  12130503 atacaagaaggataagaataaaaaatacggtaactagctcaagaataggccctcctagctaaag-tatgagcaaccatgttcgcttgtctcataacaaac 12130601  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    ||||||| ||||||||||||||||    
T  12130602 ttcacctcgaagttggaatgtaaa 12130625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 11291929 - 11292042
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    ||||| |||| ||||||||||||||||||| || |||||||||||||  |   |||  |||||  ||||||||| |||||||||| ||||||||||||||    
T  11291929 atacaggaaggataagaataaaaaatacggtgactagcccaagaacaagccgacctagctaaag-tatgagcaaacatgttcgctcgtctcctaacaaac 11292027  T
Q  101 ttcaccttgaagttg 115  Q
    |||||||||||||||    
T  11292028 ttcaccttgaagttg 11292042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 18344223 - 18344281
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  18344223 tatgagcaaccatgttcgcttatctcctaacaaatttcaccttgaagttggaatgtaaa 18344281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 35158719 - 35158832
Alignment:
Q  12 ataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttca--ccttg 109  Q
    ||||||||||||||||||| |  |||||||||||||| |  ||||  | |||  |||||||||| ||||||||||||||| ||||||||||||  |||||    
T  35158719 ataagaataaaaaatacggtgcctagcccaagaacaggccgccctagcgaaac-tatgagcaactatgttcgcttgtctcataacaaacttcatgccttg 35158817  T
Q  110 aagttggaatgtaaa 124  Q
    |||||||||||||||    
T  35158818 aagttggaatgtaaa 35158832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 1417925 - 1417968
Alignment:
Q  81 tcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  1417925 tcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaa 1417968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 25552463 - 25552345
Alignment:
Q  5 aagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttca 104  Q
    |||||| ||||||||||||||||||| || || || ||||||||     ||| ||||||  ||||||||||||||||| |||||||| ||||||| ||||    
T  25552463 aagaaggataagaataaaaaatacggtgactaacctaagaacaggtcttcctaactaaag-tatgagcaaccatgttcacttgtctcttaacaaatttca 25552365  T
Q  105 ccttgaagttggaatgtaaa 124  Q
     ||| || ||| ||||||||    
T  25552364 tcttaaaattgaaatgtaaa 25552345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 22845845 - 22845732
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||| |||||||||||||||| || || ||||  ||||||||    ||||  |||||  |||||||||  |||||||||||| |||||||||||    
T  22845845 atacaagaaggataagaataaaaaatatggtgactagcttaagaacaggtcgccctagctaaag-tatgagcaa--atgttcgcttgt-tcctaacaaac 22845750  T
Q  101 ttcaccttgaagttggaa 118  Q
    ||||| ||||||||||||    
T  22845749 ttcacattgaagttggaa 22845732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 14827401 - 14827280
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||||||||||||| ||||| ||| || ||||||||||| |     ||||   ||||  |||||||||||||||||| |||| || |||| |||    
T  14827401 atacaagaagaataagaatagaaaatgcggtgactagcccaagaatatgtcgccctagataaag-tatgagcaaccatgttcgtttgt-tcttaactaac 14827304  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    || |||| ||||||||||||||||    
T  14827303 tttacctcgaagttggaatgtaaa 14827280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 13109798 - 13109856
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    ||||| |||| ||||||| ||||||||| |||||||||||||  | |||||||||||||    
T  13109798 tatgaacaactatgttcgtttgtctcctgacaaacttcacctcaacgttggaatgtaaa 13109856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 26198940 - 26198882
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||| |||||||||| |||||  |||||||||||||||||  |||||| ||||||||    
T  26198940 tatgagaaaccatgttcacttgttacctaacaaacttcacctcaaagttgaaatgtaaa 26198882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1417855 - 1417903
Alignment:
Q  1 atacaagaagaataagaat-aaaaaatacggcgattagcccaagaacag 48  Q
    |||||||||| |||||||| ||||||||||| || ||||||||||||||    
T  1417855 atacaagaaggataagaataaaaaaatacggtgactagcccaagaacag 1417903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 512 - 390
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||||||||||||||||||||||| || ||||||||  | || |  ||||  ||||   |||||||||||||||||||||||||||||||||||    
T  512 atacaagaagaataagaataaaaaatacggtgactagcccaaatataggccgccctagctaagc-tatgagcaaccatgttcgcttgtctcctaacaaac 414  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    |||| || ||||||||||||||||    
T  413 ttcatctcgaagttggaatgtaaa 390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 193 - 250
Alignment:
Q  66 tatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaa 123  Q
    ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||    
T  193 tatgagcaaccgtgttcgcttgtctcctaacaaacttcacatcgaagttggaatgtaa 250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 20480 - 20358
Alignment:
Q  1 atacaagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaac 100  Q
    |||||||||  ||||||||||||||||||  || ||||||||||||||  | ||||  |||||  |||||| || ||| |||||||||||||||||||||    
T  20480 atacaagaatgataagaataaaaaatacgatgactagcccaagaacaggttgccctagctaaag-tatgagtaatcatattcgcttgtctcctaacaaac 20382  T
Q  101 ttcaccttgaagttggaatgtaaa 124  Q
    |||||||  ||||||  |||||||    
T  20381 ttcacctcaaagttgacatgtaaa 20358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 44110 - 44220
Alignment:
Q  5 aagaagaataagaataaaaaatacggcgattagcccaagaacagactaccctgactaaaaatatgagcaaccatgttcgcttgtctcctaacaaacttca 104  Q
    |||||| ||| |||| |||||||| | || ||||||||||||||||  ||||  ||||   ||||||||||||||||||||| |||||||||||||||||    
T  44110 aagaaggatatgaatcaaaaatacagtgactagcccaagaacagaccgccctagctaagc-tatgagcaaccatgttcgcttctctcctaacaaacttca 44208  T
Q  105 ccttgaagttgg 116  Q
    |||  |||||||    
T  44209 cctcaaagttgg 44220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 13377 - 13321
Alignment:
Q  68 tgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaa 124  Q
    |||||| |||||||||||||||  ||||||||||| ||||  ||||||| |||||||    
T  13377 tgagcagccatgttcgcttgtcgtctaacaaactttacctcaaagttgggatgtaaa 13321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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