View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21543_high_7 (Length: 322)
Name: NF21543_high_7
Description: NF21543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21543_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 41522794 - 41522492
Alignment:
| Q |
1 |
tgaaaaggaagtcaggaaggtgtgattcagattctaaaagcactctgctaagaaaacataagaaagaatcgagtggtagtcatggttaaatggtctctgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41522794 |
tgaaaaggaagtcaggaaggtgtgattcagattctaaaagcactctgctaagaaaacatacgaaagaaacgagtggtagtcatggttaaatggtctctgt |
41522695 |
T |
|
| Q |
101 |
gtcaaagtcagtgatgaaatcaaccaaagatgaacattcagacgagactcctatcagaaattggaagagaaaacaccttccacgaaaagaaaatgagttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41522694 |
gtcaaagtcagtgatgaaatcaaccaaagatgaacattcagacgagactcctatcagaaattggaagagaaaacaccttccacgaaaagaaaatgagttt |
41522595 |
T |
|
| Q |
201 |
aatacaaagaattatagtgaaaatcttgttggattatggattgaggtttggtaggccatggataaaatgttttaaaaagttgttattgattcttttagcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41522594 |
aatacaaagaattatagtgaaaatcttgttggattatggattgaggtttggtaggccatggataaaatgttttaaaaagttgttattgattcttttagcc |
41522495 |
T |
|
| Q |
301 |
gaa |
303 |
Q |
| |
|
||| |
|
|
| T |
41522494 |
gaa |
41522492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 41513830 - 41513526
Alignment:
| Q |
1 |
tgaaaaggaagtcaggaaggtgtgattcagattctaaaagcactctgctaagaaaacataagaaagaatc--gagtggtagtcatggttaaatggtctct |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| |
|
|
| T |
41513830 |
tgaaaaggaagtcaggaaggtgtgattcagattctaaaagcactctgctaagaaaacataagaaataaacaagagtggtagtcatggttaaatggtctct |
41513731 |
T |
|
| Q |
99 |
gtgtcaaagtcagtgatgaaatcaaccaaagatgaacattcagacgagactcctatcagaaattggaagagaaaacaccttccacgaaaagaaaatgagt |
198 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41513730 |
gtgtcaaagtcagcgatgaaatcaaccaaagatgaacattcagatgagactcctattagaaattggaagagaaaacaccttccacgaaaagaaaatgagt |
41513631 |
T |
|
| Q |
199 |
ttaatacaaagaattatagtgaaaatcttgttggattatggattgaggtttggtaggccatggataaaatgttttaaaaagttgttattgattcttttag |
298 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41513630 |
ttaatacaaagaaatatagtgaaaatcttgttggattttgggttgaggtttattaggccatggataaaatgttttaagaagttgttattgattcttttag |
41513531 |
T |
|
| Q |
299 |
ccgaa |
303 |
Q |
| |
|
||||| |
|
|
| T |
41513530 |
ccgaa |
41513526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 33080567 - 33080287
Alignment:
| Q |
1 |
tgaaaaggaagtcaggaaggtgtgattcagattctaaaag-cactctgctaagaaaacataagaaagaatc--gagtggtagtcatggttaaatggtctc |
97 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| ||||||||| |||||| |||| ||| || | |||||||||||||||||||||||| || |
|
|
| T |
33080567 |
tgaaaaggaagtcaggaaggtatggttcagattctaaaaaacactctgctgagaaaatataataaataaacaagagtggtagtcatggttaaatggtttc |
33080468 |
T |
|
| Q |
98 |
tgtgtcaaagtcagtgatgaaatcaaccaaagatgaacattcagacgagactcctatcagaaattggaagagaa--------aacaccttccacgaaaag |
189 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| |||||||| |
|
|
| T |
33080467 |
tgtgtcaaagtcagcgatgaattcaaccaaagatgaacattcagatgagactcctattagaaattggaagagaaaacagtcaaacaccttcaacgaaaag |
33080368 |
T |
|
| Q |
190 |
aaaatgagtttaatacaaagaattatagtgaaaatcttgttggattatggattgaggtttggtaggccatggataaaatgt |
270 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||| |
|
|
| T |
33080367 |
aaaatgagtttaatacaaagaaatatagtgaaaatcttgttggattatgggttgaagtttagtaggccatggataaaatgt |
33080287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 147 - 252
Target Start/End: Complemental strand, 41498416 - 41498311
Alignment:
| Q |
147 |
actcctatcagaaattggaagagaaaacaccttccacgaaaagaaaatgagtttaatacaaagaattatagtgaaaatcttgttggattatggattgagg |
246 |
Q |
| |
|
|||||||| | ||||| ||| ||||||||||||||| |||||||||||||| |||||| ||||| |||||||||| ||||||| |||||||| || ||| |
|
|
| T |
41498416 |
actcctatgataaatttgaatagaaaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttgttagattatgggttaagg |
41498317 |
T |
|
| Q |
247 |
tttggt |
252 |
Q |
| |
|
|||||| |
|
|
| T |
41498316 |
tttggt |
41498311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University