View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21543_low_1 (Length: 676)
Name: NF21543_low_1
Description: NF21543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21543_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 12 - 652
Target Start/End: Original strand, 45128870 - 45129510
Alignment:
| Q |
12 |
agcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45128870 |
agcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtg |
45128969 |
T |
|
| Q |
112 |
aaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45128970 |
aaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaaa |
45129069 |
T |
|
| Q |
212 |
gaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaattcaactttggtatcaacagctagcaaattgtatggaatn |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45129070 |
gaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaattcaactttggtatcaacagctagcaaattgtatggaata |
45129169 |
T |
|
| Q |
312 |
nnnnnnntcatcaatgtagcattacttaccgctatgcctttaaggttgaatatcttgtttcttttgttcatttcaatcataagctttgcaagttgaggaa |
411 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45129170 |
aaaaaaatcatcaatgtagccttacttacggctatgcctttaaggttgaatatcttgtttcttttgttcatttcaatcataagctttgcaagttgaggaa |
45129269 |
T |
|
| Q |
412 |
cataatgacctgaaatacatgcataaattttattaattagtaatgattgatgtaacatgtttcaaaaagcagtaaaggtgacaagtttacctgcataact |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45129270 |
cataatgacctgaaatacatgcataaattttattaattagtaatgattgatgtaacatgtttcaaaaagcagtaaaggtgacaagtttacctgcataact |
45129369 |
T |
|
| Q |
512 |
ttcaccagttagaaacaaatctctgtttctatattgaggaaacttgttgaaccaacgttccaagaatacaagattgtcccttgcttaacaattcaaaaaa |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45129370 |
ttcaccagttagaaacaaatctctgtttctatattgaggaaacttgttgaaccaacgttccaagaatacaagattgtcccttgcttaacaattcaaaaaa |
45129469 |
T |
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| Q |
612 |
gcaccgtttcagattacaaaatatgtacagtacaataaaac |
652 |
Q |
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| T |
45129470 |
gcaccgtttcagattacaaaatatgtacagtacaataaaac |
45129510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 12 - 272
Target Start/End: Original strand, 40280725 - 40280985
Alignment:
| Q |
12 |
agcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtg |
111 |
Q |
| |
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||||| ||||||||||| |||||||| || |||||||||||||||||||| | || |||||| | || || | ||| |||||||||||||| | | |
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| T |
40280725 |
agcactgaggaaatgcatacatcaagggtaacatcatatttgtccacaaacttgctggtttctctgcttacttggctcatgacctttgaacaaagcaggg |
40280824 |
T |
|
| Q |
112 |
aaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaaa |
211 |
Q |
| |
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||| |||| ||||| ||||||||||||||| | || ||||| || || |||||||| |||||||||| ||||||||| | |||||| ||||| || |
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| T |
40280825 |
aaatggagtttctatagtactcacttacatactgcgaataattgcagcctgcggtgaacattttgtaagttgaatctgatatcaatccatgagaccagaa |
40280924 |
T |
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| Q |
212 |
gaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaat |
272 |
Q |
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||| ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |
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| T |
40280925 |
gaactcagcccttgaattgaagtcagtggcatattctagaagtggatttcccaactgcaat |
40280985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 592
Target Start/End: Original strand, 40281445 - 40281539
Alignment:
| Q |
498 |
ttacctgcataactttcaccagttagaaacaaatctctgtttctatattgaggaaacttgttgaaccaacgttccaagaatacaagattgtccct |
592 |
Q |
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||||||||||||||||| || || | |||||||||| ||| | | ||||| || ||||||||||||||| || |||||| ||||| |||||||| |
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| T |
40281445 |
ttacctgcataactttctcctgtcaaaaacaaatctgtgtgtttgtattgggggaacttgttgaaccaatgtagcaagaacacaaggttgtccct |
40281539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 6632284 - 6632346
Alignment:
| Q |
197 |
tccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatt |
259 |
Q |
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|||||| ||||||||||| ||||| |||||||| ||||| |||||| |||||| ||||||||| |
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| T |
6632284 |
tccatgagaccaaaagaactcagctcttgaattaaaatctgttgcaaattctaaaactggatt |
6632346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 6632101 - 6632166
Alignment:
| Q |
14 |
cacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttact |
79 |
Q |
| |
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|||||| || || ||||||||||||||||||||||| ||||| |||||||| || |||||| |||| |
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| T |
6632101 |
cacagaagatatacaaacatcaagagtgacatcatacttgtcaacaaatctgcttgtttctgtact |
6632166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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