View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21543_low_10 (Length: 311)
Name: NF21543_low_10
Description: NF21543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21543_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 42309829 - 42309512
Alignment:
| Q |
7 |
acagcactatctaatcaagcgtaaaaccttttaaattctttggcaaaatttgaagaaatcactaaattgattgatatttt-caatttaagagactaagtt |
105 |
Q |
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| T |
42309829 |
acagcactatctaatcaagcgtaaaaccttttaaattctgtggcaaaatttgaagaaatcactaaattgattgatatttttcaatttaagagactaagtt |
42309730 |
T |
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| Q |
106 |
gttactttttacaaatctgaggactaaattaaccaatcttttacgattta------ttcatca------tagaaactaacacttgtcaaaggaaaggaac |
193 |
Q |
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| T |
42309729 |
gttactttttacaaatctgaggactaaattaaccaatcttttacgattttaaatttttaataactaaaatagaaactaacacttgtcaaaggaaaggaac |
42309630 |
T |
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| Q |
194 |
atagattaactctgactgtgaaaatatatgaaacttatatacctgtatcaaggttaccaatgattgtgtcttcaccatatcttgccttctcccaaatgga |
293 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42309629 |
atagtttgactctgactgtgaaaatatatgaaacttatatacctgtatcaaggttaccaatgattgtgtcttcaccatatcttgccttctcccaaatgga |
42309530 |
T |
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| Q |
294 |
ttccttaggaattatttc |
311 |
Q |
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| T |
42309529 |
ttccttaggaattatttc |
42309512 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 2419951 - 2420005
Alignment:
| Q |
49 |
gcaaaatttgaagaaatcactaaattgattgata-ttttcaatttaagagactaa |
102 |
Q |
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| T |
2419951 |
gcaaaatttgaaaaaaagactaaattgattgatatttttaaatttaagagactaa |
2420005 |
T |
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