View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21543_low_13 (Length: 265)
Name: NF21543_low_13
Description: NF21543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21543_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 3 - 250
Target Start/End: Original strand, 12507393 - 12507640
Alignment:
| Q |
3 |
agaactcgcaaacgagataagaaccattgtaaaaaacgaaggcggggtaacaattcagtcgttagaaaaaatgtcgttagttaaatccgttgtttatgaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12507393 |
agaactcgcaaacgagataagaaccattgtaaaaaacgaaggcggggtaacaattcagtcgttagaaaaaatgtcattagttaaatccgttgtttatgaa |
12507492 |
T |
|
| Q |
103 |
gttttgaggattgaacctgtcgttcgttatcaatatgcaaaagcaagagaagatttaattgtgaagagtcacgatgcagcttttgaaattaaaaagggtg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12507493 |
gttttgaggattgaacctgtcgttcgttatcaatatgcaaaagcaagagaagatttaattgtgaagagtcacgatgcagcttttgaaattaaaaagggtg |
12507592 |
T |
|
| Q |
203 |
agatgattttcgggtaccaatcttttgctactaaggaccctagggttt |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12507593 |
agatgattttcgggtaccaatcttttgctactaaggatcctagggttt |
12507640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 250
Target Start/End: Original strand, 12492463 - 12492710
Alignment:
| Q |
3 |
agaactcgcaaacgagataagaaccattgtaaaaaacgaaggcggggtaacaattcagtcgttagaaaaaatgtcgttagttaaatccgttgtttatgaa |
102 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |||||| |
|
|
| T |
12492463 |
agaactcgcaaacgagataagaaccgtggtaaaacaagaaggcggagtaacaattcagtcgttagaaaaaatgccgttagttaaatcagttgtctatgaa |
12492562 |
T |
|
| Q |
103 |
gttttgaggattgaacctgtcgttcgttatcaatatgcaaaagcaagagaagatttaattgtgaagagtcacgatgcagcttttgaaattaaaaagggtg |
202 |
Q |
| |
|
| || | |||||||||| || | ||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
12492563 |
gcgatgcgaattgaacctgctgtgccttatcaatatgcaaaagcaagagaagatttaatcgtgaagagtcacgacgcggcttttgaaataaaaaagggtg |
12492662 |
T |
|
| Q |
203 |
agatgattttcgggtaccaatcttttgctactaaggaccctagggttt |
250 |
Q |
| |
|
||||||| || || |||||| |||| || || || || |||||||||| |
|
|
| T |
12492663 |
agatgatatttggataccaacctttcgcgacaaaagatcctagggttt |
12492710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University