View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21543_low_15 (Length: 243)
Name: NF21543_low_15
Description: NF21543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21543_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 51650912 - 51650702
Alignment:
| Q |
13 |
gaacctgtgttcaaattctgagtatggtgtttcaggatcaattgtgcttagatactcttcagctttcctcagaacatgttgaagagaatcagggttttga |
112 |
Q |
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| T |
51650912 |
gaacctgtgttcaaattctgagtatggtgtttcaggatcaattgtgcttagatactcttcagctttcctcagaacatgttgaagagaatcagggttttga |
51650813 |
T |
|
| Q |
113 |
attctgtcattcaacatcaatgtctgcatatgtnnnnnnnncacatttcagtgaaatcaaagcagacacacaaaagatcactactaaataaaaatatact |
212 |
Q |
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| T |
51650812 |
attctgtcattcaacatcaatgtctgcatatgtaaaaaaaacacatttcggtgaaatcaaagcagacacac--aagatcactactaaataaaaatatact |
51650715 |
T |
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| Q |
213 |
aatagaacatgtt |
225 |
Q |
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||||||||||||| |
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| T |
51650714 |
aatagaacatgtt |
51650702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 19155011 - 19155133
Alignment:
| Q |
18 |
tgtgttcaaattctgagtatggtgtttcaggatcaattgtgcttagatactcttcagctttcctcagaacatgttgaagagaatcagggttttgaattct |
117 |
Q |
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||||||||||||| ||||| |||||||| ||| ||||| ||| ||||| ||||| || | |||| |||||||||||| ||||| | ||||||||||| |
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| T |
19155011 |
tgtgttcaaattccgagtaaggtgtttcgggagcaattatgcgaagataatcttctgcagttctcaaaacatgttgaagtgaatccagattttgaattct |
19155110 |
T |
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| Q |
118 |
gtcattcaacatcaatgtctgca |
140 |
Q |
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| T |
19155111 |
gtcattcaccatcatagtctgca |
19155133 |
T |
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