View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21543_low_2 (Length: 629)
Name: NF21543_low_2
Description: NF21543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21543_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 11 - 611
Target Start/End: Complemental strand, 52547414 - 52546816
Alignment:
| Q |
11 |
cagagacttgtcacaacagaaatggtcttacaaggtttgttgcctagcaatgtttcagttggtagaagaaacattgcacaatgtttttcaaaatcgaaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52547414 |
cagagacttgtcacaacagaaatggtcttacaaggtttgttgcctagcaatgtttcagttggtagaagaaacattgcacaatgtttttcaaaatcgaaaa |
52547315 |
T |
|
| Q |
111 |
atgttgttgatacttacttgtgtcatcactaagaaaatgtttaagcataatataatttcttgtttatttttgtgttgaagcattatatgtgtatcattca |
210 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52547314 |
atgttgttgatacttacttgt--catcactaagaaaatgtttaagcataatataatttcttgtttatttttgtgttgaagcattatatgtgtatcattca |
52547217 |
T |
|
| Q |
211 |
tttttatatgtgatttcgcttttcggaaataatgcaacattaagaaattccatttcaattttgttgctggtcagattggtctcaagggtgaaaccttaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52547216 |
tttttatatgtgatttcgcttttcggaaataatgcaacattaagaaattccatttcaattttgttgctggtcagattggtctcaagggtgaaaccttaaa |
52547117 |
T |
|
| Q |
311 |
acttcccactgtaagtggaagttcatcagttcaatgggtacaaggaccatcattggctaaaagacaacctttgacatggtacaaggtatgattaaatttt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52547116 |
acttcccactgtaagtggaagttcatcagttcaatgggtacaaggaccatcattggctaaaagacaacctttgacatggtacaaggtatgattaaatttt |
52547017 |
T |
|
| Q |
411 |
caacatatgttttatttctgtcacatggatctgtgatcacctgcctctgaatgtattctgaatcattatttgtacttcaatgtcattagacaacttttag |
510 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
52547016 |
caacatatgttttatttctgtcacatgaatctgtgatcacctgcctctgaatgtattctgaatcattatttgtacttcaatgtcattagacagcttttag |
52546917 |
T |
|
| Q |
511 |
gacaccagcaggaaatgatccattagctctagatatgagtagtatgggaaagggtcaagtatggataaatagtcaaaacattggacgccatatgcctgga |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
52546916 |
gacaccagcaggaaatgatccattagctctagatatgagtagtatgggaaagggtcaagtatggataaatggtcgaaacattggacgccatatgcctgga |
52546817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 601
Target Start/End: Original strand, 17128821 - 17128901
Alignment:
| Q |
521 |
ggaaatgatccattagctctagatatgagtagtatgggaaagggtcaagtatggataaatagtcaaaacattggacgccat |
601 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||| || ||||| | ||| |||| | |||||| |||||| |
|
|
| T |
17128821 |
ggaaacgatccattggctctagatatgagtagtatgggaaagggtgaaatatgggttaatggtcagagcattggtcgccat |
17128901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 282 - 415
Target Start/End: Original strand, 17128594 - 17128727
Alignment:
| Q |
282 |
cagattggtctcaagggtgaaaccttaaaacttcccactgtaagtggaagttcatcagttcaatgggtacaaggaccatcattggctaaaagacaacctt |
381 |
Q |
| |
|
|||||||| || || |||||| ||||||| |||| || |||||||||||| || ||| ||||| ||||||| ||| || |||||| |||||||| |
|
|
| T |
17128594 |
cagattggactgaaaggtgaatccttaaaccttcataccacaagtggaagttcttctgttaaatggacacaaggatcatttttatctaaaaaacaacctt |
17128693 |
T |
|
| Q |
382 |
tgacatggtacaaggtatgattaaattttcaaca |
415 |
Q |
| |
|
||||||||||||||||| || | | ||||||||| |
|
|
| T |
17128694 |
tgacatggtacaaggtaagaatgagttttcaaca |
17128727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 5232740 - 5232788
Alignment:
| Q |
350 |
acaaggaccatcattggctaaaagacaacctttgacatggtacaaggta |
398 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5232740 |
acaaggatcatcattggctaaaaaacaacctttgacatggtacaaggta |
5232788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 579
Target Start/End: Original strand, 5232912 - 5232967
Alignment:
| Q |
524 |
aatgatccattagctctagatatgagtagtatgggaaagggtcaagtatggataaa |
579 |
Q |
| |
|
||||||||| | || |||||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
5232912 |
aatgatccagtggcactagatatgagtagcatgggaaagggtgaaatatggataaa |
5232967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University