View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21543_low_3 (Length: 486)

Name: NF21543_low_3
Description: NF21543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21543_low_3
NF21543_low_3
[»] chr1 (9 HSPs)
chr1 (167-383)||(27877958-27878172)
chr1 (19-77)||(27877808-27877866)
chr1 (19-77)||(10395304-10395362)
chr1 (19-77)||(12539223-12539281)
chr1 (19-77)||(40610034-40610092)
chr1 (19-77)||(3601164-3601222)
chr1 (32-77)||(9782430-9782475)
chr1 (18-75)||(32544292-32544349)
chr1 (30-77)||(2114474-2114521)
[»] chr8 (6 HSPs)
chr8 (23-75)||(26951388-26951440)
chr8 (19-73)||(21276375-21276429)
chr8 (26-75)||(18150955-18151004)
chr8 (29-77)||(11911332-11911380)
chr8 (19-66)||(33324812-33324859)
chr8 (31-69)||(34618975-34619013)
[»] chr7 (6 HSPs)
chr7 (19-75)||(17852451-17852507)
chr7 (19-75)||(12129598-12129654)
chr7 (19-66)||(34881075-34881122)
chr7 (19-77)||(9451567-9451625)
chr7 (29-66)||(31956950-31956987)
chr7 (29-77)||(36677734-36677782)
[»] chr6 (5 HSPs)
chr6 (19-75)||(11657741-11657797)
chr6 (19-77)||(32900010-32900068)
chr6 (20-77)||(29021910-29021967)
chr6 (19-59)||(27862053-27862093)
chr6 (19-69)||(13104324-13104373)
[»] scaffold0010 (1 HSPs)
scaffold0010 (23-75)||(255314-255366)
[»] chr4 (5 HSPs)
chr4 (19-75)||(16889248-16889304)
chr4 (19-74)||(35097015-35097071)
chr4 (36-75)||(32881904-32881943)
chr4 (23-66)||(37856927-37856970)
chr4 (23-66)||(46078569-46078612)
[»] chr3 (7 HSPs)
chr3 (19-75)||(1017574-1017630)
chr3 (23-75)||(26730819-26730871)
chr3 (19-66)||(4525394-4525441)
chr3 (23-75)||(47703683-47703735)
chr3 (30-75)||(7579623-7579668)
chr3 (19-77)||(10346430-10346488)
chr3 (19-57)||(20223258-20223296)
[»] chr2 (3 HSPs)
chr2 (23-75)||(41315813-41315865)
chr2 (23-64)||(10977868-10977909)
chr2 (23-72)||(28589903-28589952)
[»] chr5 (4 HSPs)
chr5 (23-73)||(30304932-30304982)
chr5 (19-76)||(24870537-24870594)
chr5 (19-75)||(24275349-24275405)
chr5 (19-75)||(24386808-24386864)
[»] scaffold0445 (1 HSPs)
scaffold0445 (30-75)||(12650-12695)
[»] scaffold0151 (1 HSPs)
scaffold0151 (19-66)||(21308-21355)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 167 - 383
Target Start/End: Original strand, 27877958 - 27878172
Alignment:
Q  167 cgctcctatacatatttaaaaaatagttgagagaaggtgttgtatgtactacgaatttgtttgatgttgttaagaacacgagagaatatatcatactatt 266  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||    
T  27877958 cgctcctatacatatttgaaaaatagttgagagaaggtgttgtatgtactatgaatttgtttgatgttgttaagaacacgagaga--atatcatactatt 27878055  T
Q  267 agacacaactttaaaatatacatagtgtccaatactaaaattacaaggnnnnnnnnaaggtgtaaatttacaagggctgtcaaggatgactaccaaaaaa 366  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| ||||    
T  27878056 agacacaactttaaaatatacatagtgtacaatactaaaattacaaggttttttttaaggtgtaaatttacaagggctgtcaaggatgactaccacaaaa 27878155  T
Q  367 ctatgtgccatttcact 383  Q
    |||||||||||||||||    
T  27878156 ctatgtgccatttcact 27878172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 27877808 - 27877866
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 77  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27877808 gatgtacctacatgtatttgacatattttagctaatgaaatgcaatgatttccttcctt 27877866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 10395362 - 10395304
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 77  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  10395362 gatgtacctacatgtatttggcatattttagttaatgaaatacaatgattttcttcctt 10395304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 12539223 - 12539281
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 77  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||| || |||||||    
T  12539223 gatgtacctacatttatttgacatattttagctaatgaaatgcaatgaatttcttcctt 12539281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 40610034 - 40610092
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 77  Q
    ||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||    
T  40610034 gatgtacatacatgtatttgacatattttagctaatgaaatgtaatgattttcttcctt 40610092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 3601222 - 3601164
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 77  Q
    ||||||||| |||||||||| |||||||||||||||| |||||||||| || |||||||    
T  3601222 gatgtaccttcatgtatttgacatattttagctaatggaatgcaatgaatttcttcctt 3601164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 9782475 - 9782430
Alignment:
Q  32 gtatttggcatattttagctaatgaaatgcaatgatttccttcctt 77  Q
    |||||||||||||||||||||||||||| ||| ||||| |||||||    
T  9782475 gtatttggcatattttagctaatgaaatccaacgatttgcttcctt 9782430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 32544349 - 32544292
Alignment:
Q  18 agatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    ||||||||||  |||||||||||| |||||| ||||||||||||||||| || |||||    
T  32544349 agatgtaccttaatgtatttggcacattttaactaatgaaatgcaatgaatttcttcc 32544292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 2114474 - 2114521
Alignment:
Q  30 atgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 77  Q
    |||||||||||| |||||| ||||||||||||||||| || |||||||    
T  2114474 atgtatttggcacattttaactaatgaaatgcaatgaatttcttcctt 2114521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 26951440 - 26951388
Alignment:
Q  23 tacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26951440 tacctacatgtatttggcatattttatctaatgaaatgcaatgatttccttcc 26951388  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 21276429 - 21276375
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttcctt 73  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21276429 gatgtatctacacgtatttggcatattttagctaatgaaatgcaatgatttcctt 21276375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 18151004 - 18150955
Alignment:
Q  26 ctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  18151004 ctacatgtatttagcatattttatctaatgaaatgcaatgatttccttcc 18150955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 11911380 - 11911332
Alignment:
Q  29 catgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 77  Q
    ||||||||||| | |||||||||||||||||||||||| || |||||||    
T  11911380 catgtatttggtacattttagctaatgaaatgcaatgaatttcttcctt 11911332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 33324812 - 33324859
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 66  Q
    |||||||||| ||||||||| |||||||||| |||| |||||||||||    
T  33324812 gatgtacctatatgtatttgacatattttagttaataaaatgcaatga 33324859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 34619013 - 34618975
Alignment:
Q  31 tgtatttggcatattttagctaatgaaatgcaatgattt 69  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  34619013 tgtatttgacatattttagttaatgaaatgcaatgattt 34618975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 17852451 - 17852507
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  17852451 gatgtacctacatgtatttggcatattttatctaatgaaatgcaatgattttcttcc 17852507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 12129598 - 12129654
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||    
T  12129598 gatgtacctacatgtatttgacatattttatctaatgaaatgcaatgattttcttcc 12129654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 34881075 - 34881122
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 66  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  34881075 gatgtatctacatgtatttggcatatttttgctaatgaaatgcaatga 34881122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 9451567 - 9451625
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 77  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||| | || |||||||    
T  9451567 gatgtacctacatgtatttgacatattttacctaatgaaatgcaattaatttcttcctt 9451625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 31956987 - 31956950
Alignment:
Q  29 catgtatttggcatattttagctaatgaaatgcaatga 66  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  31956987 catgtatttggcacattttaactaatgaaatgcaatga 31956950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 36677734 - 36677782
Alignment:
Q  29 catgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 77  Q
    |||||||||| || |||||||||||||||||||||| | || |||||||    
T  36677734 catgtatttgacacattttagctaatgaaatgcaataaatttcttcctt 36677782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 11657741 - 11657797
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  11657741 gatgtacctacatatatttggcatattttagctaatgaaatgcaatgattttcttcc 11657797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 32900010 - 32900068
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 77  Q
    |||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32900010 gatgcacctatatgtatttgacatattttagctaatgaaatgcaatgatttccttcctt 32900068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 29021910 - 29021967
Alignment:
Q  20 atgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 77  Q
    |||||||||||| |||||| ||||||||||||||| ||||||||||| || |||||||    
T  29021910 atgtacctacatatatttgacatattttagctaattaaatgcaatgaatttcttcctt 29021967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 27862093 - 27862053
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaat 59  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  27862093 gatgtacctacatgtatttgacatattttagctaatgaaat 27862053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 13104373 - 13104324
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgattt 69  Q
    |||||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  13104373 gatgtacctatatgtatttggcata-tttaactaatgaaatgcaatgattt 13104324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 255366 - 255314
Alignment:
Q  23 tacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  255366 tacctacatgtatttggcatactttatctaatgaaatgcaatgatttccttcc 255314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 16889248 - 16889304
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||    
T  16889248 gatgtacctacatgtatttggcatattttatctaacgaaatgcaatgattttcttcc 16889304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 35097015 - 35097071
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatg-atttccttc 74  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  35097015 gatgtaccttcatgtatttggcacattttagctaatgaaatgcaatgaatttccttc 35097071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 32881904 - 32881943
Alignment:
Q  36 ttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  32881904 ttggcatattttatctaatgaaatgcaatgattttcttcc 32881943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 37856970 - 37856927
Alignment:
Q  23 tacctacatgtatttggcatattttagctaatgaaatgcaatga 66  Q
    ||||||||||||||||  |||||||| |||||||||||||||||    
T  37856970 tacctacatgtatttgaaatattttacctaatgaaatgcaatga 37856927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 46078569 - 46078612
Alignment:
Q  23 tacctacatgtatttggcatattttagctaatgaaatgcaatga 66  Q
    ||||| |||||||||| || ||||||||||||||||||||||||    
T  46078569 taccttcatgtatttgacacattttagctaatgaaatgcaatga 46078612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 1017630 - 1017574
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||    
T  1017630 gatgtacctacatgtatttggcatattttatctaatgaaatgcaataattttcttcc 1017574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 26730871 - 26730819
Alignment:
Q  23 tacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  26730871 tacctacatgtatttggcatattttatctaatgaaatgcaatgattttcttcc 26730819  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 4525441 - 4525394
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 66  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4525441 gatgtacgtacatgtatttggcatattttagctaatgaaatgcaatga 4525394  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 47703735 - 47703683
Alignment:
Q  23 tacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    |||||||||||||||||||||||||| ||||||||||||| || |||||||||    
T  47703735 tacctacatgtatttggcatattttatctaatgaaatgcactgttttccttcc 47703683  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 7579623 - 7579668
Alignment:
Q  30 atgtatttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||    
T  7579623 atgtatttggcatattttatctaatgaaatgcaatgattttcttcc 7579668  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 10346488 - 10346430
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcctt 77  Q
    ||||||||  |||||||||| || |||||||||||||||||||||||| || |||||||    
T  10346488 gatgtaccctcatgtatttgacacattttagctaatgaaatgcaatgaatttcttcctt 10346430  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 20223258 - 20223296
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaa 57  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  20223258 gatgtacctacatgtatttggcatattttagttaatgaa 20223296  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 41315865 - 41315813
Alignment:
Q  23 tacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  41315865 tacctacatatatttggcatattttatctaatgaaatgcaatgatttccttcc 41315813  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 10977868 - 10977909
Alignment:
Q  23 tacctacatgtatttggcatattttagctaatgaaatgcaat 64  Q
    |||||||||||||||| |||||||||||||||||||| ||||    
T  10977868 tacctacatgtatttgacatattttagctaatgaaatacaat 10977909  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 28589952 - 28589903
Alignment:
Q  23 tacctacatgtatttggcatattttagctaatgaaatgcaatgatttcct 72  Q
    |||||| ||||||||||||||||||| ||||||||||||| | |||||||    
T  28589952 tacctaaatgtatttggcatattttatctaatgaaatgcacttatttcct 28589903  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 30304932 - 30304982
Alignment:
Q  23 tacctacatgtatttggcatattttagctaatgaaatgcaatgatttcctt 73  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  30304932 tacctacatgtatttggcatattttatctaatgaagtgcaatgatttcctt 30304982  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 24870537 - 24870594
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcct 76  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||    
T  24870537 gatgtacctacatatatttgatatattttagctaatgaaatgcaatgattttcttcct 24870594  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 24275349 - 24275405
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    ||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  24275349 gatgtacttacatgtatttggcatattttaactaatgaaatacaatgattttcttcc 24275405  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 24386864 - 24386808
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    ||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  24386864 gatgtacttacatgtatttggcatattttaactaatgaaatacaatgattttcttcc 24386808  T

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Target: scaffold0445 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 12650 - 12695
Alignment:
Q  30 atgtatttggcatattttagctaatgaaatgcaatgatttccttcc 75  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||    
T  12650 atgtatttggcatattttatctaatgaaatgcaatgattttcttcc 12695  T

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Target: scaffold0151 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 21355 - 21308
Alignment:
Q  19 gatgtacctacatgtatttggcatattttagctaatgaaatgcaatga 66  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||    
T  21355 gatgtacccacatgtatttgacacattttagctaatgaaatgcaatga 21308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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