View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21543_low_5 (Length: 422)
Name: NF21543_low_5
Description: NF21543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21543_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 24 - 417
Target Start/End: Original strand, 40987453 - 40987845
Alignment:
| Q |
24 |
tgattgaaatgatcacttcgcttttgctaatttccttcctgtagttagaaagagattttctaattaaaacattttcatatacaggaccatttcaaattac |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40987453 |
tgattgaaatgatcacttcgcttttgctaatttccttcctgtagttagaaagagattttctaattaaaacatgttcatatacaggaccatttcaaattac |
40987552 |
T |
|
| Q |
124 |
ctaaaactaacgtagcaaaatttaatcccatagtagcgcaagaagtaagacaagacaagaaactttcaaacatgattcatcacttatgacgattttaatg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40987553 |
ctaaaactaacgtagcaaaatttaatcccatagtagcgcaagaagtaagacaagacaagaaactttcaaacatgattcatcacttatgacgattttaatg |
40987652 |
T |
|
| Q |
224 |
agtttaaaccataataaagaccgacgnnnnnnnatctttgtaaattagaggaaaaattatgataatcaacatgcatgcagcaagtgatttactcccctcc |
323 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40987653 |
agtttaaaccataacaaagaccgac-tttttttatctttgtaaattagagaaaaaattatgataatcaacatgcatgcagcaagtgatttactcccctcc |
40987751 |
T |
|
| Q |
324 |
agtccttaacatatgagaatttttggagaattttttggttctatacttctatttataagaaaaagtcgcaattttaagatgtattcttctcact |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| ||||| |
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| T |
40987752 |
agtccttaacatatgagaatttttggagaattttttggttctatatttctatttattagaaaaagtcacaattttaagatgtattcttttcact |
40987845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 24 - 400
Target Start/End: Original strand, 29246936 - 29247322
Alignment:
| Q |
24 |
tgattgaaatgatcacttcgcttttgctaatttccttcctgtagttagaaagagattttctaattaaaacattttcatatacaggaccatttcaaattac |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29246936 |
tgattgaaatgatcacttcgcttttgctaatttccttcttgtagttagaaagagattttctaattaaaacattttcatatacaggaccatttcaaattac |
29247035 |
T |
|
| Q |
124 |
ctaaaactaacgtagcaaaatttaatcccatagtagcgcaagaagtaagacaagacaagaaactttcaaacatgattcatcacttatgacgattttaatg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29247036 |
ctaaaactaacgtagcaaaatttaatcccatagtagcgcaagaagtaagacaagacaagaaattttcaaacatgattcatcacttatgacgattttaatg |
29247135 |
T |
|
| Q |
224 |
agtttaaaccataataaagaccgacgnnnnnnnatctttgtaaattagaggaaaaattatgataatcaacatgcatgcagcaagtgatttactcccctcc |
323 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29247136 |
agtttaaaccataataaagaccgacgtttttttatctttgtaaattagaggaaaaattatgataatcaacatgcatgcagcaagtgatttgctcccctcc |
29247235 |
T |
|
| Q |
324 |
agtccttaacatatgagaatttttggagaattttttggttc----------tatacttctatttataagaaaaagtcgcaattttaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
29247236 |
ggtccttaacatatgagaatttttggagaattttttggttctatatataaatatacttctatttataagaaaaagtcacaattttaa |
29247322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 15065480 - 15065438
Alignment:
| Q |
318 |
ccctccagtccttaacatatgagaatttttggagaattttttg |
360 |
Q |
| |
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||||| ||||||||| ||| ||||||||||||||||||||||| |
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| T |
15065480 |
ccctctagtccttaatataagagaatttttggagaattttttg |
15065438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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