View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21543_low_8 (Length: 315)
Name: NF21543_low_8
Description: NF21543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21543_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 297
Target Start/End: Original strand, 1196786 - 1197068
Alignment:
| Q |
15 |
aatattaattattatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttctaaagaacaataacccatcatctcttcaatgc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1196786 |
aatattaattattatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttctaaagaacaataacccatcatctcttcaatgc |
1196885 |
T |
|
| Q |
115 |
taattgatctacattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1196886 |
taattgatctacattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaat |
1196985 |
T |
|
| Q |
215 |
cctcaatacaccagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacccaaatatt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1196986 |
cctcaatacaccagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacccaaatatt |
1197068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 7289790 - 7289514
Alignment:
| Q |
19 |
ttaattattatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttctaaagaacaataacccatcatctcttcaatgctaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||| |||||||||| ||| |
|
|
| T |
7289790 |
ttaattattatatttatctacacaatggactttgaggatgatgagaacaaacgagttaattttctaaagaacaataactcatcatttcttcaatgccaat |
7289691 |
T |
|
| Q |
119 |
tgatctacattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctc |
218 |
Q |
| |
|
||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
7289690 |
tgatctacattcttg-tttgaacacta-tccttattctttccatgatcttcaaccatcttcaaaatacactcaaaagtagagacttcacaaagaatcctc |
7289593 |
T |
|
| Q |
219 |
aatacaccagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacccaaatatt |
297 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7289592 |
aaaacaccagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacacaaatatt |
7289514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 166 - 295
Target Start/End: Complemental strand, 50471318 - 50471189
Alignment:
| Q |
166 |
cttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctcaatacaccagcttgttgaaacccaaattcttcttcagcttctctcaa |
265 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||| | |
|
|
| T |
50471318 |
cttcaaccatcttcaagatactctcaaacactgaaacttcacaaggaattctcagaacaccagtttgttcaaacccaaattcttcttcagcttctctgag |
50471219 |
T |
|
| Q |
266 |
aagaatctgaaaagcttgatgacccaaata |
295 |
Q |
| |
|
| || ||||| ||||||||| ||||||| |
|
|
| T |
50471218 |
taatatatgaaaggcttgatgagccaaata |
50471189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University