View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21544_high_2 (Length: 626)
Name: NF21544_high_2
Description: NF21544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21544_high_2 |
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| [»] scaffold0005 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Original strand, 232036 - 232661
Alignment:
| Q |
1 |
atttagtgttaaataatatatgattgggccgnnnnnnnataaacagcgatgcaatgtgattgtacttgcaacaatttgcggtatcgagtccaagtatggt |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
232036 |
atttagtgttaaataatatatgattgggccgtttttttataaacagcgataaaatgtgattgtacttgcaacaatttgcggtatcgagtccaagtatggt |
232135 |
T |
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| Q |
101 |
tggtattatgattcatgcaccaaatgtgcagcaagggttaagattgtggctggaaaaatgtattgttcgatatgtaagctgggaaggaatgttgtgccaa |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |
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| T |
232136 |
tggtattatgattcatgcaccaaatgtgcggcaagggttaagattgtggctggaaaaatgtattgttcgagatgtaagcagggaaggaatgttgtgccca |
232235 |
T |
|
| Q |
201 |
ggccatctaactaatgatttttaaattttcttaattgcttcttcggatattttttcctgacgtgcaatatatctgttaattgatgtggttcttaattgtc |
300 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
232236 |
ggtcagctaactaatgatttttaaattttcttaattgcttctttggatattttttcctaacgtgcaatatatctgttaattgatgtggttcttaattgtc |
232335 |
T |
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| Q |
301 |
agttaacaatagttaggtacaaagttcatggtcaggtgatggatgctgccggatcaacaactttcattttgtttgatcgtaatgtccaaacttatgttgg |
400 |
Q |
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||| ||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
232336 |
agtcaacaatagttaggtacaaagtccatgttcaggtgatggatgctaccggatcaacaactttcattttgtttgatcgtaatgtccaaacttatgttgg |
232435 |
T |
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| Q |
401 |
caggagtgtatatgatctgattgatgcacccagtcaggtgatacttaatgtccacactatgtagcacctaatttgatgccattgttgatttctgcaaact |
500 |
Q |
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| T |
232436 |
caggagtgtacatgatctgattgatgcacccagtcaggtgatactaaatgtccacactatgtagcacctaatttgatgccattgttgatttatgcagact |
232535 |
T |
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| Q |
501 |
agcgacaattgtgattatccatcagatctnnnnnnnnttgttggaaagcaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttgg |
600 |
Q |
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| T |
232536 |
agcgacaattgtggttatccatctgatctagaaatttttgttggaaagaaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttgg |
232635 |
T |
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| Q |
601 |
cgcaattattctgtcaaaaggaccac |
626 |
Q |
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| T |
232636 |
cgcaattattctgtcaaaaggaccac |
232661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Complemental strand, 14585338 - 14584714
Alignment:
| Q |
1 |
atttagtgttaaataatatatgattgggccgnnnnnnnataaacagcgatgcaatgtgattgtacttgcaacaatttgcggtatcgagtccaagtatggt |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14585338 |
atttagtgttaaataatatatgattgggccgtttttt-ataaacagcgataaaatgtgattgtacttgcaacaatttgcggtatcgagtccaagtatggt |
14585240 |
T |
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| Q |
101 |
tggtattatgattcatgcaccaaatgtgcagcaagggttaagattgtggctggaaaaatgtattgttcgatatgtaagctgggaaggaatgttgtgccaa |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |
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| T |
14585239 |
tggtattatgattcatgcaccaaatgtgcggcaagggttaagattgtggctggaaaaatgtattgttcgagatgtaagcagggaaggaatgttgtgccca |
14585140 |
T |
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| Q |
201 |
ggccatctaactaatgatttttaaattttcttaattgcttcttcggatattttttcctgacgtgcaatatatctgttaattgatgtggttcttaattgtc |
300 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14585139 |
ggtcagctaactaatgatttttaaattttcttaattgcttctttggatattttttcctaacgtgcaatatatctgttaattgatgtggttcttaattgtc |
14585040 |
T |
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| Q |
301 |
agttaacaatagttaggtacaaagttcatggtcaggtgatggatgctgccggatcaacaactttcattttgtttgatcgtaatgtccaaacttatgttgg |
400 |
Q |
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||| ||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14585039 |
agtcaacaatagttaggtacaaagtccatgttcaggtgatggatgctaccggatcaacaactttcattttgtttgatcgtaatgtccaaacttatgttgg |
14584940 |
T |
|
| Q |
401 |
caggagtgtatatgatctgattgatgcacccagtcaggtgatacttaatgtccacactatgtagcacctaatttgatgccattgttgatttctgcaaact |
500 |
Q |
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| T |
14584939 |
caggagtgtacatgatctgattgatgcacccagtcaggtgatactaaatgtccacactatgtagcacctaatttgatgccattgttgatttatgcagact |
14584840 |
T |
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| Q |
501 |
agcgacaattgtgattatccatcagatctnnnnnnnnttgttggaaagcaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttgg |
600 |
Q |
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| T |
14584839 |
agcgacaattgtggttatccatctgatctagaaatttttgttggaaagaaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttgg |
14584740 |
T |
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| Q |
601 |
cgcaattattctgtcaaaaggaccac |
626 |
Q |
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|||||||||||||||||||||||||| |
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| T |
14584739 |
cgcaattattctgtcaaaaggaccac |
14584714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 11217813 - 11217871
Alignment:
| Q |
95 |
tatggttggtattatgattcatgcaccaaatgtgcagcaagggttaagattgtggctgg |
153 |
Q |
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| T |
11217813 |
tatggttggtattatgatgcatgcaccaaatgtgctggaaggattacgattgttgctgg |
11217871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 11228320 - 11228378
Alignment:
| Q |
95 |
tatggttggtattatgattcatgcaccaaatgtgcagcaagggttaagattgtggctgg |
153 |
Q |
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|||||||||||||||||| |||||||||||||||| | |||| ||| |||||| ||||| |
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| T |
11228320 |
tatggttggtattatgatgcatgcaccaaatgtgctggaaggattacgattgttgctgg |
11228378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 538 - 623
Target Start/End: Complemental strand, 49825356 - 49825272
Alignment:
| Q |
538 |
ttgttggaaagcaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgcaattattctgtcaaaaggac |
623 |
Q |
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| T |
49825356 |
ttgttggaaaacaaatgctatttaaggttgaaattacggatgggaacttaatgcata-attggcgcaactatgctgtcaaaaggac |
49825272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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